pycoQC 2.5.0.21-foss-2019b-Python-3.7.4
pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies basecaller (Albacore/Guppy).Accessing pycoQC 2.5.0.21-foss-2019b-Python-3.7.4
To load the module for pycoQC 2.5.0.21-foss-2019b-Python-3.7.4 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load pycoQC/2.5.0.21-foss-2019b-Python-3.7.4
BEAR Apps Version
Extensions
- pycoQC 2.5.0.21
More Information
For more information visit the pycoQC website.
Dependencies
This version of pycoQC has a direct dependency on: foss/2019b h5py/2.10.0-foss-2019b-Python-3.7.4 plotly.py/4.5.3-foss-2019b Pysam/0.15.3-GCC-8.3.0 Python/3.7.4-GCCcore-8.3.0 SciPy-bundle/2019.10-foss-2019b-Python-3.7.4 tqdm/4.41.1-GCCcore-8.3.0
Last modified on 6th July 2020