pycoQC 2.5.0.21-foss-2019b-Python-3.7.4

pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies basecaller (Albacore/Guppy).

Accessing pycoQC 2.5.0.21-foss-2019b-Python-3.7.4

To load the module for pycoQC 2.5.0.21-foss-2019b-Python-3.7.4 please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load pycoQC/2.5.0.21-foss-2019b-Python-3.7.4

BEAR Apps Version

2020h

Extensions

  • pycoQC 2.5.0.21

More Information

For more information visit the pycoQC website.

Dependencies

This version of pycoQC has a direct dependency on: foss/2019b h5py/2.10.0-foss-2019b-Python-3.7.4 plotly.py/4.5.3-foss-2019b Pysam/0.15.3-GCC-8.3.0 Python/3.7.4-GCCcore-8.3.0 SciPy-bundle/2019.10-foss-2019b-Python-3.7.4 tqdm/4.41.1-GCCcore-8.3.0

Last modified on 6th July 2020