shovill 1.1.0-foss-2019b-Python-3.7.4

Faster SPAdes assembly of Illumina reads

Accessing shovill 1.1.0-foss-2019b-Python-3.7.4

To load the module for shovill 1.1.0-foss-2019b-Python-3.7.4 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load shovill/1.1.0-foss-2019b-Python-3.7.4

BEAR Apps Version

2020h

More Information

For more information visit the shovill website.

Dependencies

This version of shovill has a direct dependency on: BWA/0.7.17-GCC-8.3.0 FLASH/1.2.11-GCC-8.3.0 foss/2019b KMC/3.1.2rc1-GCC-8.3.0-Python-3.7.4 Lighter/1.1.2-foss-2019b Mash/2.2-foss-2019b MEGAHIT/1.2.8-GCCcore-8.3.0 pigz/2.4-GCCcore-8.3.0 Pilon/1.23-Java-11 Python/3.7.4-GCCcore-8.3.0 samclip/0.4.0-GCCcore-8.3.0-Perl-5.30.0 SAMtools/1.10-GCC-8.3.0 seqtk/1.3-GCC-8.3.0 SKESA/2.4.0-foss-2019b SPAdes/3.14.1-GCC-8.3.0-Python-3.7.4 Trimmomatic/0.39-Java-11 Velvet/1.2.10-foss-2019b-mt-kmer_191

Last modified on 11th November 2020