vcflib 1.0.9-foss-2022a-R-4.2.3

vcflib provides methods to manipulate and interpret sequence variation as it can be described by VCF. The Variant Call Format (VCF) is a flat-file, tab-delimited textual format intended to concisely describe reference-indexed genetic variations between individuals.

Accessing vcflib 1.0.9-foss-2022a-R-4.2.3

To load the module for vcflib 1.0.9-foss-2022a-R-4.2.3 please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load vcflib/1.0.9-foss-2022a-R-4.2.3

BEAR Apps Version

2020h

More Information

For more information visit the vcflib website.

Dependencies

This version of vcflib has a direct dependency on: bzip2/1.0.8-GCCcore-11.3.0 fastahack/1.0.0-GCCcore-11.3.0 filevercmp/20191210-GCCcore-11.3.0 foss/2022a fsom/20151117-GCCcore-11.3.0 HTSlib/1.15.1-GCC-11.3.0 intervaltree/0.1-GCCcore-11.3.0 multichoose/1.0.3-GCCcore-11.3.0 Perl/5.34.1-GCCcore-11.3.0 Python/3.10.4-GCCcore-11.3.0 R/4.2.3-foss-2022a smithwaterman/20160702-GCCcore-11.3.0 tabixpp/1.1.2-GCC-11.3.0 WFA2/2.3.3-GCCcore-11.3.0 XZ/5.2.5-GCCcore-11.3.0 zlib/1.2.12-GCCcore-11.3.0

Required By

This version of vcflib is a direct dependent of: freebayes/1.3.7-foss-2022a-R-4.2.3

Last modified on 3rd November 2023