BioPerl 1.7.8-GCCcore-11.3.0

Bioperl is the product of a community effort to produce Perl code which is useful in biology. Examples include Sequence objects, Alignment objects and database searching objects.

Accessing BioPerl 1.7.8-GCCcore-11.3.0

To load the module for BioPerl 1.7.8-GCCcore-11.3.0 please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load BioPerl/1.7.8-GCCcore-11.3.0

BEAR Apps Version

2021a

Extensions

  • Bio::DB::SeqFeature 1.7.4
  • Bio::Procedural 1.7.4
  • BioPerl 1.7.8
  • XML::DOM::XPath 0.14
  • XML::Writer 0.900

More Information

For more information visit the BioPerl website.

Dependencies

This version of BioPerl has a direct dependency on: DB_File/1.858-GCCcore-11.3.0 GCCcore/11.3.0 Perl/5.34.1-GCCcore-11.3.0 XML-LibXML/2.0207-GCCcore-11.3.0

Required By

This version of BioPerl is a direct dependent of: ABRicate/1.0.0-gompi-2022a Bio-DB-HTS/3.01-GCC-11.3.0 VEP/107-GCC-11.3.0

Other Versions

These versions of BioPerl are available on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 19th October 2023