MSIsensor 0.6-GCCcore-10.3.0

MSIsensor is a C++ program to detect replication slippage variants at microsatellite regions, and differentiate them as somatic or germline. Given paired tumor and normal sequence data, it builds a distribution for expected (normal) and observed (tumor) lengths of repeated sequence per microsatellite, and compares them using Pearson's Chi-Squared Test.

Accessing MSIsensor 0.6-GCCcore-10.3.0

To load the module for MSIsensor 0.6-GCCcore-10.3.0 please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load MSIsensor/0.6-GCCcore-10.3.0

BEAR Apps Version

2021a

Architectures

EL8-cascadelakeEL8-icelakeEL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the MSIsensor website.

Dependencies

This version of MSIsensor has a direct dependency on: GCCcore/10.3.0 ncurses/6.2-GCCcore-10.3.0 zlib/1.2.11-GCCcore-10.3.0

Last modified on 31st May 2022