BEAR Applications: NiBabel 3.2.1-foss-2020a-Python-3.8.2 (for BlueBEAR, BEARCloud VMs, and CaStLeS VMs)

NiBabel 3.2.1-foss-2020a-Python-3.8.2

NiBabel provides read/write access to some common medical and neuroimaging file formats, including: ANALYZE (plain, SPM99, SPM2 and later), GIFTI, NIfTI1, NIfTI2, MINC1, MINC2, MGH and ECAT as well as Philips PAR/REC. We can read and write Freesurfer geometry, and read Freesurfer morphometry and annotation files. There is some very limited support for DICOM. NiBabel is the successor of PyNIfTI.

Accessing NiBabel 3.2.1-foss-2020a-Python-3.8.2

To load the module for NiBabel 3.2.1-foss-2020a-Python-3.8.2 please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load NiBabel/3.2.1-foss-2020a-Python-3.8.2

There is a GPU enabled version of this module: NiBabel 3.2.1-fosscuda-2020a-Python-3.8.2

BEAR Apps Version

2021a

Extensions

bz2file 0.98
nibabel 3.2.1

More Information

For more information visit the NiBabel website.

Dependencies

This version of NiBabel has a direct dependency on: foss/2020a Pillow/7.0.0-GCCcore-9.3.0-Python-3.8.2 pydicom/2.1.2-GCCcore-9.3.0-Python-3.8.2 Python/3.8.2-GCCcore-9.3.0 SciPy-bundle/2020.03-foss-2020a-Python-3.8.2

Other Versions

These versions of NiBabel are available on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Version	BEAR Apps Version
4.0.2-foss-2022a	2022a
3.2.2-foss-2021b	2021b
3.2.1-fosscuda-2020a-Python-3.8.2	2020a
3.2.1-foss-2021a	2021a
3.1.0-fosscuda-2019b-Python-3.7.4	2019b
3.1.0-foss-2019b-Python-3.7.4	2019b
3.1.0-foss-2019a-Python-3.7.2	2019a
2.4.0-foss-2019a	2019a
2.3.0-fosscuda-2018b-Python-3.6.6	2018b
2.3.0-foss-2018b-Python-3.6.6	2018b

Last modified on 21st December 2021