NiBabel 3.2.2-foss-2021b

NiBabel provides read/write access to some common medical and neuroimaging file formats, including: ANALYZE (plain, SPM99, SPM2 and later), GIFTI, NIfTI1, NIfTI2, MINC1, MINC2, MGH and ECAT as well as Philips PAR/REC. We can read and write Freesurfer geometry, and read Freesurfer morphometry and annotation files. There is some very limited support for DICOM. NiBabel is the successor of PyNIfTI.

Accessing NiBabel 3.2.2-foss-2021b

To load the module for NiBabel 3.2.2-foss-2021b please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load NiBabel/3.2.2-foss-2021b

BEAR Apps Version

2021a

Extensions

  • bz2file 0.98
  • nibabel 3.2.2

More Information

For more information visit the NiBabel website.

Dependencies

This version of NiBabel has a direct dependency on: foss/2021b Pillow/8.3.2-GCCcore-11.2.0 pydicom/2.2.2-GCCcore-11.2.0 Python/3.9.6-GCCcore-11.2.0 SciPy-bundle/2021.10-foss-2021b

Required By

This version of NiBabel is a direct dependent of: MNE-Python/1.1.1-foss-2021b

Other Versions

These versions of NiBabel are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 4th October 2022