Python 3.9.6-GCCcore-11.2.0

There is a newer version of Python

Python is a programming language that lets you work more quickly and integrate your systems more effectively.

Accessing Python 3.9.6-GCCcore-11.2.0

To load the module for Python 3.9.6-GCCcore-11.2.0 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load Python/3.9.6-GCCcore-11.2.0

BEAR Apps Version

2021a

Extensions

  • alabaster 0.7.12
  • appdirs 1.4.4
  • asn1crypto 1.4.0
  • atomicwrites 1.4.0
  • attrs 21.2.0
  • Babel 2.9.1
  • backports.entry_points_selectable 1.1.0
  • backports.functools_lru_cache 1.6.4
  • bcrypt 3.2.0
  • bitstring 3.1.9
  • blist 1.3.6
  • CacheControl 0.12.6
  • cachy 0.3.0
  • certifi 2021.5.30
  • cffi 1.14.6
  • chardet 4.0.0
  • charset-normalizer-2.0.4
  • cleo 0.8.1
  • click 8.0.1
  • clikit 0.6.2
  • colorama 0.4.4
  • crashtest 0.3.1
  • cryptography 3.4.7
  • Cython 0.29.24
  • decorator 5.0.9
  • distlib 0.3.2
  • docopt 0.6.2
  • docutils 0.17.1
  • ecdsa 0.17.0
  • filelock 3.0.12
  • flit 3.3.0
  • flit-core-3.3.0
  • fsspec 2021.7.0
  • future 0.18.2
  • glob2 0.7
  • html5lib 1.1
  • idna 3.2
  • imagesize 1.2.0
  • importlib_metadata 4.6.3
  • importlib_resources 5.2.2
  • iniconfig 1.1.1
  • intervaltree 3.1.0
  • intreehooks 1.0
  • ipaddress 1.0.23
  • jeepney 0.7.1
  • Jinja2 3.0.1
  • joblib 1.0.1
  • jsonschema 3.2.0
  • keyring 21.2.0
  • keyrings.alt 4.1.0
  • liac-arff-2.5.0
  • lockfile 0.12.2
  • MarkupSafe 2.0.1
  • mock 4.0.3
  • more-itertools-8.8.0
  • msgpack 1.0.2
  • netaddr 0.8.0
  • netifaces 0.11.0
  • nose 1.3.7
  • packaging 20.9
  • paramiko 2.7.2
  • pastel 0.2.1
  • pathlib2 2.3.6
  • paycheck 1.0.2
  • pbr 5.6.0
  • pexpect 4.8.0
  • pip 21.2.2
  • pkginfo 1.7.1
  • platformdirs 2.2.0
  • pluggy 0.13.1
  • poetry 1.1.7
  • poetry-core-1.0.3
  • psutil 5.8.0
  • ptyprocess 0.7.0
  • py 1.10.0
  • py_expression_eval 0.3.13
  • pyasn1 0.4.8
  • pycparser 2.20
  • pycrypto 2.6.1
  • Pygments 2.9.0
  • pylev 1.4.0
  • PyNaCl 1.4.0
  • pyparsing 2.4.7
  • pyrsistent 0.18.0
  • pytest 6.2.4
  • python-dateutil-2.8.2
  • pytoml 0.1.21
  • pytz 2021.1
  • regex 2021.8.3
  • requests 2.26.0
  • requests-toolbelt-0.9.1
  • scandir 1.10.0
  • SecretStorage 3.3.1
  • semantic_version 2.8.5
  • setuptools 57.4.0
  • setuptools-rust-0.12.1
  • setuptools_scm 6.0.1
  • shellingham 1.4.0
  • simplegeneric 0.8.1
  • simplejson 3.17.3
  • six 1.16.0
  • snowballstemmer 2.1.0
  • sortedcontainers 2.4.0
  • Sphinx 4.1.2
  • sphinx-bootstrap-theme-0.7.1
  • sphinxcontrib-applehelp-1.0.2
  • sphinxcontrib-devhelp-1.0.2
  • sphinxcontrib-htmlhelp-2.0.0
  • sphinxcontrib-jsmath-1.0.1
  • sphinxcontrib-qthelp-1.0.3
  • sphinxcontrib-serializinghtml-1.1.5
  • sphinxcontrib-websupport-1.2.4
  • tabulate 0.8.9
  • threadpoolctl 2.2.0
  • toml 0.10.2
  • tomlkit 0.7.2
  • typing_extensions 3.10.0.0
  • ujson 4.0.2
  • urllib3 1.26.6
  • virtualenv 20.7.0
  • wcwidth 0.2.5
  • webencodings 0.5.1
  • wheel 0.36.2
  • xlrd 2.0.1
  • zipfile36 0.1.3
  • zipp 3.5.0

More Information

For more information visit the Python website.

Dependencies

This version of Python has a direct dependency on: binutils/2.37-GCCcore-11.2.0 bzip2/1.0.8-GCCcore-11.2.0 GCCcore/11.2.0 GMP/6.2.1-GCCcore-11.2.0 libffi/3.4.2-GCCcore-11.2.0 libreadline/8.1-GCCcore-11.2.0 ncurses/6.2-GCCcore-11.2.0 OpenSSL/1.1 SQLite/3.36-GCCcore-11.2.0 XZ/5.2.5-GCCcore-11.2.0 zlib/1.2.11-GCCcore-11.2.0

Required By

This version of Python is a direct dependent of: adjustText/0.7.3-foss-2021b aicsimageio/4.9.4-foss-2021b aiohttp/3.8.1-GCCcore-11.2.0 archspec/0.1.3-GCCcore-11.2.0 Arrow/6.0.0-foss-2021b ArviZ/0.11.4-foss-2021b astropy/5.0.4-foss-2021b attrdict3/2.0.2-GCCcore-11.2.0 autograd/1.5-foss-2021b awscli/2.9.4-foss-2021b bcbio-gff/0.6.9-foss-2021b BEAR-Python-MSc-Bioinformatics/2021b-foss-2021b BeautifulSoup/4.10.0-GCCcore-11.2.0 biom-format/2.1.12-foss-2021b Biopython/1.79-foss-2021b BioServices/1.10.1-foss-2021b Bisbee/20210108-foss-2021b-R-4.2.0 bokeh/2.4.2-foss-2021b boto3/1.20.13-GCCcore-11.2.0 bx-python/0.8.13-foss-2021b canopus_treemap/0.0.1-foss-2021b Cartopy/0.20.3-foss-2021b CASTEP/22.11-foss-2021b CGAL/4.14.3-gompi-2021b CIRI-long/1.1.0-foss-2021b cma/3.2.2-foss-2021b CMSeq/1.0.4-foss-2021b corner/2.2.1-foss-2021b cppy/1.1.0-GCCcore-11.2.0 cuCIM/23.2.0-foss-2021b-CUDA-11.4.1 CuPy/11.4.0-foss-2021b-CUDA-11.4.1 cutadapt/4.1-GCCcore-11.2.0 czifile/2019.7.2-foss-2021b dask/2022.1.0-foss-2021b DCC/0.5.0-foss-2021b DeepCell/0.11.1-foss-2021b-CUDA-11.4.1 DendroPy/4.5.2-GCCcore-11.2.0 dill/0.3.4-GCCcore-11.2.0 dm-tree/0.1.6-GCCcore-11.2.0 DRAM/1.3.6-foss-2021b ecc_finder/1.0.0_20221007_67d06f3-foss-2021b edlib/1.3.9-GCC-11.2.0 emcee/3.1.3-foss-2021b Fiona/1.8.21-foss-2021b flatbuffers-python/2.0-GCCcore-11.2.0 GDAL/3.3.2-foss-2021b Gdspy/1.6.12-foss-2021b GObject-Introspection/1.68.0-GCCcore-11.2.0 gprofiler-official/1.0.0-foss-2021b Graphviz/2.50.0-GCCcore-11.2.0 graphviz/0.20.1-foss-2021b GRASS/8.2.0-foss-2021b h5py/3.6.0-foss-2021b HDBSCAN/0.8.29-foss-2021b HTSeq/0.11.3-foss-2021b hypothesis/6.14.6-GCCcore-11.2.0 imageio/2.13.5-foss-2021b inferCNV/1.12.0-foss-2021b-R-4.2.0 intermine/1.13.0-GCCcore-11.2.0 ioh/0.3.2.8.3-foss-2021b IPython/7.26.0-GCCcore-11.2.0 IRkernel/1.3-foss-2021b-R-4.2.0 jax/0.3.13-foss-2021b jax/0.3.13-foss-2021b-CUDA-11.4.1 JupyterLab/3.1.6-GCCcore-11.2.0 LAMMPS/23Jun2022-foss-2021b-kokkos-CUDA-11.4.1 LAMMPS/23Jun2022-foss-2021b-kokkos leidenalg/0.8.8-foss-2021b lightkurve/2.3.0-foss-2021b lxml/4.6.3-GCCcore-11.2.0 Mako/1.1.4-GCCcore-11.2.0 matplotlib/3.4.3-foss-2021b Meep/1.25.0-foss-2021b Meson/0.58.2-GCCcore-11.2.0 MetaboLabPy/0.8.4-foss-2021b MetaPhlAn/3.0.14-foss-2021b methylartist/1.2.6-foss-2021b mlxtend/0.19.0-foss-2021b MNE-Python/1.1.1-foss-2021b MPB/1.11.1-foss-2021b NanoFilt/2.8.0-foss-2021b netcdf4-python/1.5.7-foss-2021b networkx/2.6.3-foss-2021b nghttp2/1.48.0-GCC-11.2.0 NiBabel/3.2.2-foss-2021b NLTK/3.7-foss-2021b numba/0.54.1-foss-2021b numpyro/0.9.2-foss-2021b-CUDA-11.4.1 numpyro/0.9.2-foss-2021b OpenCV/4.5.5-foss-2021b-contrib Optuna/2.10.0-foss-2021b OrthoFinder/2.5.4-foss-2021b panaroo/1.3.2-foss-2021b ParaView/5.9.1-foss-2021b-mpi pbjam/1.0.0-foss-2021b PhyloPhlAn/3.0.2-foss-2021b Pillow/8.3.2-GCCcore-11.2.0 pkgconfig/1.5.5-GCCcore-11.2.0-python plotly.py/5.4.0-GCCcore-11.2.0 PLUMED/2.7.3-foss-2021b PLUMED/2.8.0-foss-2021b protobuf-python/3.17.3-GCCcore-11.2.0 psycopg2/2.9.5-GCCcore-11.2.0 PyAutoGUI/0.9.53-GCCcore-11.2.0 pybedtools/0.8.2-GCC-11.2.0 pyBigWig/0.3.18-foss-2021b pybind11/2.7.1-GCCcore-11.2.0 PyCairo/1.20.1-GCCcore-11.2.0 pydicom/2.2.2-GCCcore-11.2.0 pydot/1.4.2-GCCcore-11.2.0 PyEnsembl/2.0.1-foss-2021b pyfaidx/0.7.0-GCCcore-11.2.0 pyhpo/3.1.2-foss-2021b PyMC3/3.11.1-foss-2021b pymoo/0.6.0-foss-2021b PyQt5/5.15.4-GCCcore-11.2.0 Pysam/0.17.0-GCC-11.2.0 Pysam/0.18.0-GCC-11.2.0 PySide2/5.15.2-GCCcore-11.2.0 pyspoa/0.0.8-GCC-11.2.0 PyTables/3.6.1-foss-2021b pytest-xdist/2.5.0-GCCcore-11.2.0 python-igraph/0.9.8-foss-2021b python-isal/0.11.1-GCCcore-11.2.0 python-Levenshtein/0.12.2-foss-2021b PyYAML/5.4.1-GCCcore-11.2.0 QGIS/3.28.1-foss-2021b QScintilla/2.11.6-GCCcore-11.2.0 Qtconsole/5.3.2-GCCcore-11.2.0 QtPy/2.2.1-GCCcore-11.2.0 rpy2/3.4.5-foss-2021b scanpy/1.8.2-foss-2021b scanpy/1.9.1-foss-2021b scCODA/0.1.8-foss-2021b scikit-bio/0.5.7-foss-2021b scikit-image/0.19.1-foss-2021b scikit-learn/1.0.1-foss-2021b scikit-plot/0.3.7-foss-2021b SciPy-bundle/2021.10-foss-2021b Seaborn/0.11.2-foss-2021b SEPP/4.5.1-foss-2021b sequenza-utils/3.0.0-foss-2021b sequenza-utils/3.0.0-foss-2021b-MSc Shapely/1.8.2-foss-2021b snpEff/5.0e-GCCcore-11.2.0-Java-11 SPAdes/3.15.3-GCC-11.2.0 spektral/1.1.0-foss-2021b-CUDA-11.4.1 SplAdder/3.0.3-foss-2021b SSAM/1.0.2-foss-2021b statsmodels/0.13.1-foss-2021b TALON/20230209-foss-2021b TensorFlow/2.7.1-foss-2021b-CUDA-11.4.1 TensorFlow/2.7.1-foss-2021b TensorFlow/2.8.4-foss-2021b tensorflow-probability/0.16.0-foss-2021b Theano/1.1.2-foss-2021b-PyMC Tkinter/3.9.6-GCCcore-11.2.0 TOBIAS/0.13.3-foss-2021b tqdm/4.62.3-GCCcore-11.2.0 typing-extensions/3.10.0.2-GCCcore-11.2.0 Unicycler/0.5.0-gompi-2021b VTK/9.1.0-foss-2021b wittgenstein/0.3.2-foss-2021b wxPython/4.2.0-foss-2021b xarray/0.20.1-foss-2021b XlsxWriter/3.0.2-GCCcore-11.2.0 zarr/2.13.3-foss-2021b

Other Versions

These versions of Python are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 25th May 2022