Scipion 3.0.12-foss-2021a-CUDA-11.3.1

There is a newer install of Scipion

Scipion is an image processing framework to obtain 3D models of macromolecular complexes using Electron Microscopy (3DEM). It integrates several software packages and presents an unified interface for both biologists and developers. Scipion allows to execute workflows combining different software tools, while taking care of formats and conversions. Additionally, all steps are tracked and can be reproduced later on.

Accessing Scipion 3.0.12-foss-2021a-CUDA-11.3.1

To load the module for Scipion 3.0.12-foss-2021a-CUDA-11.3.1 please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load Scipion/3.0.12-foss-2021a-CUDA-11.3.1

BEAR Apps Version

2021a

Architectures

EL8-icelake (GPUs: NVIDIA A100, NVIDIA A30) — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

Extensions

• biopython 1.76
• configparser 5.0.2
• emtable 0.0.14
• littleutils 0.2.2
• outdated 0.2.2
• peppercorn 0.6
• plotter 1.3.19
• PyWavelets 1.4.1
• scipion-app-3.0.12
• scipion-em-3.0.23
• scipion-em-gctf-3.1.1
• scipion-em-xmipp-22.7.0
• scipion-pyworkflow-3.0.27
• tifffile 2022.10.10
• tikzplotlib 0.10.1
• tkcolorpicker 2.1.3
• webcolors 1.12

More Information

For more information visit the Scipion website.

Dependencies

This version of Scipion has a direct dependency on: bibtexparser/1.4.0-GCCcore-10.3.0 ctffind/4.1.14-foss-2021a-CUDA-11.3.1 CUDA/11.3.1 foss/2021a freetype/2.10.4-GCCcore-10.3.0 GSL/2.7-GCC-10.3.0 HDF5/1.10.7-gompi-2021a Java/11 libjpeg-turbo/2.0.6-GCCcore-10.3.0 libpng/1.6.37-GCCcore-10.3.0 libreadline/8.1-GCCcore-10.3.0 LibTIFF/4.2.0-GCCcore-10.3.0 libxml2/2.9.10-GCCcore-10.3.0 libxslt/1.1.34-GCCcore-10.3.0 matplotlib/3.4.2-foss-2021a MotionCor2/1.4.7-GCCcore-10.3.0-CUDA-11.3.1 OpenCV/4.5.3-foss-2021a-CUDA-11.3.1-contrib Pillow/8.2.0-GCCcore-10.3.0 Python/3.9.5-GCCcore-10.3.0 RELION/3.1.3-foss-2021a-CUDA-11.3.1 scikit-learn/0.24.2-foss-2021a SQLite/3.35.4-GCCcore-10.3.0 Tcl/8.6.11-GCCcore-10.3.0 Tk/8.6.11-GCCcore-10.3.0 Xmipp/3.22.07-Helios-foss-2021a-CUDA-11.3.1 zlib/1.2.11-GCCcore-10.3.0

Other Versions

These versions of Scipion are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 1st December 2022