ShortStack 4.0.2-foss-2022b

Alignment of small RNA-seq data and annotation of small RNA-producing genes.

Accessing ShortStack 4.0.2-foss-2022b

To load the module for ShortStack 4.0.2-foss-2022b please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load ShortStack/4.0.2-foss-2022b

BEAR Apps Version

2021a

More Information

For more information visit the ShortStack website.

Dependencies

This version of ShortStack has a direct dependency on: BEDTools/2.30.0-GCC-12.2.0 Biopython/1.81-foss-2022b Bowtie/1.3.1-GCC-12.2.0 cutadapt/4.4-GCCcore-12.2.0 foss/2022b Python/3.10.8-GCCcore-12.2.0 SAMtools/1.17-GCC-12.2.0 SciPy-bundle/2023.02-gfbf-2022b ShortTracks/1.1-foss-2022b strucVis/0.7-foss-2022b tqdm/4.64.1-GCCcore-12.2.0 ViennaRNA/2.6.4-foss-2022b

Last modified on 25th October 2023