SoupX 1.4.8-foss-2019b-R-3.6.2

Quantify, profile and remove ambient mRNA contamination (the "soup") from droplet based single cell RNA-seq experiments. Implements the method described in Young et al. (2018) .

Accessing SoupX 1.4.8-foss-2019b-R-3.6.2

To load the module for SoupX 1.4.8-foss-2019b-R-3.6.2 please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load SoupX/1.4.8-foss-2019b-R-3.6.2

BEAR Apps Version

2021a

Extensions

  • SoupX 1.4.8

More Information

For more information visit the SoupX website.

Dependencies

This version of SoupX has a direct dependency on: foss/2019b R/3.6.2-foss-2019b Seurat/3.2.0-foss-2019b-R-3.6.2

Last modified on 13th November 2020