cellassign 520de59-foss-2019b-Python-3.7.4-R-3.6.2

Automated, probabilistic assignment of cell types in scRNA-seq data

Accessing cellassign 520de59-foss-2019b-Python-3.7.4-R-3.6.2

To load the module for cellassign 520de59-foss-2019b-Python-3.7.4-R-3.6.2 please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load cellassign/520de59-foss-2019b-Python-3.7.4-R-3.6.2

There is a GPU enabled version of this module: cellassign 520de59-fosscuda-2019b-Python-3.7.4-R-3.6.2

BEAR Apps Version

2021a

Extensions

  • cellassign 520de59
  • tfprobability 0.8.0.0

More Information

For more information visit the cellassign website.

Dependencies

This version of cellassign has a direct dependency on: foss/2019b Python/3.7.4-GCCcore-8.3.0 R/3.6.2-foss-2019b R-bundle-Bioconductor/3.10-foss-2019b-R-3.6.2 R-keras/2.2.5.0-foss-2019b-Python-3.7.4-R-3.6.2 tensorflow_probability/0.8.0-foss-2019b-Python-3.7.4

Required By

This version of cellassign is a direct dependent of: BEAR-R-bio/2019b-foss-2019b-R-3.6.2

Other Versions

These versions of cellassign are available on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 13th January 2020