cellphonedb 2.1.1-foss-2019b-Python-3.7.4-R-3.6.2

CellPhoneDB is a publicly available repository of curated receptors, ligands and its interactions. Subunit architecture is included for both ligands and receptors, representing heteromeric complexes accurately.

Accessing cellphonedb 2.1.1-foss-2019b-Python-3.7.4-R-3.6.2

To load the module for cellphonedb 2.1.1-foss-2019b-Python-3.7.4-R-3.6.2 please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load cellphonedb/2.1.1-foss-2019b-Python-3.7.4-R-3.6.2

BEAR Apps Version

2021a

Extensions

  • aniso8601 4.0.0
  • boto3 1.7.84
  • botocore 1.10.84
  • cellphonedb 2.1.1
  • click 6.7
  • docutils 0.14
  • fbpca 1.0
  • Flask 1.0
  • Flask-RESTful-0.3.6
  • Flask-Testing-0.7.0
  • geosketch 0.3
  • idna 2.5
  • itsdangerous 1.1.0
  • Jinja2 2.10.3
  • jmespath 0.9.4
  • MarkupSafe 1.1.1
  • pandas 0.23.0
  • pika 0.12.0
  • requests 2.19.1
  • rpy2 3.0.4
  • s3transfer 0.1.13
  • simplegeneric 0.8.1
  • SQLAlchemy 1.3.13
  • tqdm 4.32.0
  • urllib3 1.21.1
  • Werkzeug 0.16.0

More Information

For more information visit the cellphonedb website.

Dependencies

This version of cellphonedb has a direct dependency on: foss/2019b Python/3.7.4-GCCcore-8.3.0 PyYAML/5.1.2-GCCcore-8.3.0 R/3.6.2-foss-2019b scikit-learn/0.21.3-foss-2019b-Python-3.7.4 SciPy-bundle/2019.10-foss-2019b-Python-3.7.4

Other Versions

These versions of cellphonedb are available on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Version BEAR Apps Version
1.1.0-foss-2018b-Python-3.6.6 2018b

Last modified on 5th March 2020