gcta 1.93.2-foss-2019bGCTA (Genome-wide Complex Trait Analysis) was originally designed to estimate the proportion of phenotypic variance explained by genome- or chromosome-wide SNPs for complex traits (the GREML method), and has subsequently extended for many other analyses to better understand the genetic architecture of complex traits.
Accessing gcta 1.93.2-foss-2019b
To load the module for gcta 1.93.2-foss-2019b please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):
module load gcta/1.93.2-foss-2019b
BEAR Apps Version
For more information visit the gcta website.
This version of gcta has a direct dependency on: Boost/1.71.0-gompi-2019b Eigen/3.3.7 foss/2019b imkl/2019.5.281-gompi-2019b Spectra/0.9.0 SQLite/3.29.0-GCCcore-8.3.0 zlib/1.2.11-GCCcore-8.3.0 zstd/1.4.4-GCCcore-8.3.0
Last modified on 3rd July 2020