inferCNV 1.12.0-foss-2021b-R-4.2.0

InferCNV is used to explore tumor single cell RNA-Seq data to identify evidence for somatic large-scale chromosomal copy number alterations, such as gains or deletions of entire chromosomes or large segments of chromosomes.

Accessing inferCNV 1.12.0-foss-2021b-R-4.2.0

To load the module for inferCNV 1.12.0-foss-2021b-R-4.2.0 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load inferCNV/1.12.0-foss-2021b-R-4.2.0

BEAR Apps Version

2021a

Extensions

  • infercnv 1.12.0
  • parallelDist 0.2.6
  • phyclust-0.1-30

More Information

For more information visit the inferCNV website.

Dependencies

This version of inferCNV has a direct dependency on: foss/2021b Python/3.9.6-GCCcore-11.2.0 R/4.2.0-foss-2021b R-bundle-Bioconductor/3.15-foss-2021b-R-4.2.0 rjags/4-13-foss-2021b-R-4.2.0

Last modified on 21st July 2022