There is a newer version of minimap2Minimap2 is a fast sequence mapping and alignment program that can find overlaps between long noisy reads, or map long reads or their assemblies to a reference genome optionally with detailed alignment (i.e. CIGAR). At present, it works efficiently with query sequences from a few kilobases to ~100 megabases in length at an error rate ~15%. Minimap2 outputs in the PAF or the SAM format. On limited test data sets, minimap2 is over 20 times faster than most other long-read aligners. It will replace BWA-MEM for long reads and contig alignment.
Accessing minimap2 2.13-foss-2019a
To load the module for minimap2 2.13-foss-2019a please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load minimap2/2.13-foss-2019a
BEAR Apps Version
For more information visit the minimap2 website.
This version of minimap2 has a direct dependency on: foss/2019a
This version of minimap2 is a direct dependent of: DeepMod/0.1.1-foss-2019a-Python-3.7.2
These versions of minimap2 are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.
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Last modified on 13th March 2020