monocle 2.24.1-foss-2021b-R-4.2.0

There is a newer version of monocle

The monocle package provides a toolkit for analyzing single cell gene expression experiments. This vignette provides an overview of a single cell RNA-Seq analysis workflow with Monocle

Accessing monocle 2.24.1-foss-2021b-R-4.2.0

To load the module for monocle 2.24.1-foss-2021b-R-4.2.0 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load monocle/2.24.1-foss-2021b-R-4.2.0

BEAR Apps Version

2021a

Extensions

  • biocViews 1.64.1
  • DDRTree 0.1.5
  • HSMMSingleCell 1.16.0
  • leidenbase 0.1.11
  • monocle 2.24.1

More Information

For more information visit the monocle website.

Dependencies

This version of monocle has a direct dependency on: foss/2021b R/4.2.0-foss-2021b R-bundle-Bioconductor/3.15-foss-2021b-R-4.2.0

Required By

This version of monocle is a direct dependent of: BEAR-R-bio/2021b-foss-2021b-R-4.2.0

Other Versions

These versions of monocle are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Version BEAR Apps Version
2.28.0-foss-2022b-R-4.3.1 2022b

Last modified on 5th August 2022