pavian 81d784d-foss-2019b-R-3.6.2
Pavian is a interactive browser application for analyzing and visualization metagenomics classification results from classifiers such as Kraken, Centrifuge and MetaPhlAn. Pavian also provides an alignment viewer for validation of matches to a particular genome.Accessing pavian 81d784d-foss-2019b-R-3.6.2
To load the module for pavian 81d784d-foss-2019b-R-3.6.2 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load pavian/81d784d-foss-2019b-R-3.6.2
BEAR Apps Version
Extensions
- d3r 0.9.0
- pavian 81d784d
- rhandsontable 0.3.7
- sankeyD3 fd50a74
- shinyFileTree 76c44e7
- shinyjs 1.1
- shinyWidgets 0.5.3
More Information
For more information visit the pavian website.
Dependencies
This version of pavian has a direct dependency on: foss/2019b Pandoc/2.5 R/3.6.2-foss-2019b R-bundle-Bioconductor/3.10-foss-2019b-R-3.6.2
Last modified on 25th June 2020