sequenza 3.0.0-foss-2021b

Tools to analyze genomic sequencing data from paired normal-tumor samples, including cellularity and ploidy estimation; mutation and copy number (allele-specific and total copy number) detection, quantification and visualization.

Accessing sequenza 3.0.0-foss-2021b

To load the module for sequenza 3.0.0-foss-2021b please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load sequenza/3.0.0-foss-2021b

BEAR Apps Version

2021a

Extensions

  • copynumber 1.36.0
  • iotools-0.3-2
  • seqminer 8.4
  • sequenza 3.0.0
  • squash 1.0.9

More Information

For more information visit the sequenza website.

Dependencies

This version of sequenza has a direct dependency on: foss/2021b Pandoc/2.13 R/4.2.0-foss-2021b R-bundle-Bioconductor/3.15-foss-2021b-R-4.2.0

Required By

This version of sequenza is a direct dependent of: sequenza-utils/3.0.0-foss-2021b

Other Versions

These versions of sequenza are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Version BEAR Apps Version
3.0.0-foss-2020a-R-4.0.0 2020a

Last modified on 10th August 2022