slingshot 1.6.1-foss-2020a-R-4.0.0

Slingshot provides functions for inferring continuous, branching lineage structures in low-dimensional data. Slingshot was designed to model developmental trajectories in single-cell RNA sequencing data and serve as a component in an analysis pipeline after dimensionality reduction and clustering. It is flexible enough to handle arbitrarily many branching events and allows for the incorporation of prior knowledge through supervised graph construction.

Accessing slingshot 1.6.1-foss-2020a-R-4.0.0

To load the module for slingshot 1.6.1-foss-2020a-R-4.0.0 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load slingshot/1.6.1-foss-2020a-R-4.0.0

BEAR Apps Version

2021a

Extensions

  • princurve 2.1.5
  • slingshot 1.6.1

More Information

For more information visit the slingshot website.

Dependencies

This version of slingshot has a direct dependency on: foss/2020a R/4.0.0-foss-2020a R-bundle-Bioconductor/3.11-foss-2020a-R-4.0.0

Last modified on 12th January 2021