Genrich 0.6.1-GCC-11.2.0

Genrich is a peak-caller for genomic enrichment assays (e.g. ChIP-seq, ATAC-seq). It analyzes alignment files generated following the assay and produces a file detailing peaks of significant enrichment.

Accessing Genrich 0.6.1-GCC-11.2.0

To load the module for Genrich 0.6.1-GCC-11.2.0 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load bear-apps/2021b
module load Genrich/0.6.1-GCC-11.2.0

BEAR Apps Version

2021b

Architectures

EL8-cascadelake — EL8-haswell — EL8-icelake — Ubuntu20.04-haswell

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

More Information

For more information visit the Genrich website.

Dependencies

This version of Genrich has a direct dependency on: GCC/11.2.0 zlib/1.2.11-GCCcore-11.2.0

Required By

This version of Genrich is a direct dependent of: ecc_finder/1.0.0_20221007_67d06f3-foss-2021b

Last modified on 17th October 2022