BEAR Applications: HTSlib 1.17-GCC-12.2.0 (for BlueBEAR, BEARCloud VMs, and CaStLeS VMs)

HTSlib 1.17-GCC-12.2.0

A C library for reading/writing high-throughput sequencing data. This package includes the utilities bgzip and tabix

Accessing HTSlib 1.17-GCC-12.2.0

To load the module for HTSlib 1.17-GCC-12.2.0 please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load bear-apps/2021b module load HTSlib/1.17-GCC-12.2.0

BEAR Apps Version

2021b

More Information

For more information visit the HTSlib website.

Dependencies

This version of HTSlib has a direct dependency on: bzip2/1.0.8-GCCcore-12.2.0 cURL/7.86.0-GCCcore-12.2.0 GCC/12.2.0 XZ/5.2.7-GCCcore-12.2.0 zlib/1.2.12-GCCcore-12.2.0

Required By

This version of HTSlib is a direct dependent of: BCFtools/1.17-GCC-12.2.0 sequenza-utils/3.0.0-foss-2022b STAR/2.7.11a-GCC-12.2.0

Other Versions

These versions of HTSlib are available on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Version	BEAR Apps Version
1.16-GCC-11.3.0	2022a
1.15.1-GCC-11.3.0	2022a
1.14-GCC-11.2.0	2021b
1.12-GCC-10.3.0	2021a
1.11-GCC-10.2.0	2020b
1.10.2-GCCcore-8.3.0	2019b
1.10.2-GCC-9.3.0	2020a
1.9-GCC-8.2.0-2.31.1	2019a
1.9-foss-2019a	2019a
1.9-foss-2018b	2018b

Last modified on 9th August 2023