NiBabel 4.0.2-foss-2022a

NiBabel provides read/write access to some common medical and neuroimaging file formats, including: ANALYZE (plain, SPM99, SPM2 and later), GIFTI, NIfTI1, NIfTI2, MINC1, MINC2, MGH and ECAT as well as Philips PAR/REC. We can read and write Freesurfer geometry, and read Freesurfer morphometry and annotation files. There is some very limited support for DICOM. NiBabel is the successor of PyNIfTI.

Accessing NiBabel 4.0.2-foss-2022a

To load the module for NiBabel 4.0.2-foss-2022a please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load bear-apps/2021b
module load NiBabel/4.0.2-foss-2022a

BEAR Apps Version

2021b

Extensions

  • bz2file 0.98
  • nibabel 4.0.2

More Information

For more information visit the NiBabel website.

Dependencies

This version of NiBabel has a direct dependency on: foss/2022a Pillow/9.1.1-GCCcore-11.3.0 pydicom/2.3.0-GCCcore-11.3.0 Python/3.10.4-GCCcore-11.3.0 SciPy-bundle/2022.05-foss-2022a

Required By

This version of NiBabel is a direct dependent of: MNE-Python/1.3.1-foss-2022a mne-rsa/0.8-foss-2022a

Other Versions

These versions of NiBabel are available on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 8th March 2023