cell2location 0.1.3-foss-2022a

Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)

Accessing cell2location 0.1.3-foss-2022a

To load the module for cell2location 0.1.3-foss-2022a please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load bear-apps/2021b
module load cell2location/0.1.3-foss-2022a

There is a GPU enabled version of this module: cell2location 0.1.3-foss-2022a-CUDA-11.7.0

BEAR Apps Version

2021b

Extensions

  • cell2location 0.1.3

More Information

For more information visit the cell2location website.

Dependencies

This version of cell2location has a direct dependency on: foss/2022a OpenCV/4.6.0-foss-2022a-contrib Python/3.10.4-GCCcore-11.3.0 PyTorch/1.12.1-foss-2022a scanpy/1.9.1-foss-2022a SciPy-bundle/2022.05-foss-2022a scvi-tools/0.20.1-foss-2022a

Other Versions

These versions of cell2location are available on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 27th February 2023