nichenetr 20220911-foss-2021b-R-4.2.0

NicheNet: predict active ligand-target links between interacting cells

Accessing nichenetr 20220911-foss-2021b-R-4.2.0

To load the module for nichenetr 20220911-foss-2021b-R-4.2.0 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load bear-apps/2021b
module load nichenetr/20220911-foss-2021b-R-4.2.0

BEAR Apps Version

2021b

Architectures

EL8-cascadelake — EL8-haswell — EL8-icelake

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

Extensions

  • emoa-0.5-0.1
  • limma 3.52.4
  • mco 1.15.6
  • mlrMBO 1.1.5.1
  • nichenetr 20220911
  • smoof 1.6.0.2

More Information

For more information visit the nichenetr website.

Dependencies

This version of nichenetr has a direct dependency on: foss/2021b R/4.2.0-foss-2021b R-bundle-Bioconductor/3.15-foss-2021b-R-4.2.0

Required By

This version of nichenetr is a direct dependent of: BEAR-R-bio/2021b-foss-2021b-R-4.2.0

Last modified on 20th January 2023