BEAR Applications

umap-learn 0.5.3-foss-2022a

Uniform Manifold Approximation and Projection (UMAP) is a dimension reduction technique that can be used for visualisation similarly to t-SNE, but also for general non-linear dimension reduction.

Accessing umap-learn 0.5.3-foss-2022a

To load the module for umap-learn 0.5.3-foss-2022a please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load bear-apps/2021b
module load umap-learn/0.5.3-foss-2022a

BEAR Apps Version

2021b

Extensions

• pynndescent 0.5.7
• umap-learn-0.5.3

More Information

For more information visit the umap-learn website.

Dependencies

This version of umap-learn has a direct dependency on: foss/2022a LLVM/12.0.1-GCCcore-11.3.0 numba/0.56.4-foss-2022a Python/3.10.4-GCCcore-11.3.0 scikit-learn/1.1.2-foss-2022a SciPy-bundle/2022.05-foss-2022a tqdm/4.64.0-GCCcore-11.3.0

Required By

This version of umap-learn is a direct dependent of: scanpy/1.9.1-foss-2022a

Other Versions

These versions of umap-learn are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 27th February 2023