DeepCell 0.11.1-foss-2021b-CUDA-11.4.1

deepcell-tf is a deep learning library for single-cell analysis of biological images.This library allows users to apply pre-existing models to imaging data as well as to develop new deep learning models for single-cell analysis.

Accessing DeepCell 0.11.1-foss-2021b-CUDA-11.4.1

To load the module for DeepCell 0.11.1-foss-2021b-CUDA-11.4.1 please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load bear-apps/2022a
module load DeepCell/0.11.1-foss-2021b-CUDA-11.4.1

BEAR Apps Version

2022a

Extensions

  • DeepCell 0.11.1
  • DeepCell-Toolbox-0.11.2
  • DeepCell-Tracking-0.5.7
  • pydot 1.4.2
  • tensorflow-addons-0.17.0
  • typeguard 2.13.3

More Information

For more information visit the DeepCell website.

Dependencies

This version of DeepCell has a direct dependency on: CUDA/11.4.1 foss/2021b Graphviz/2.50.0-GCCcore-11.2.0 IPython/7.26.0-GCCcore-11.2.0 matplotlib/3.4.3-foss-2021b OpenCV/4.5.5-foss-2021b-contrib Python/3.9.6-GCCcore-11.2.0 scikit-image/0.19.1-foss-2021b scikit-learn/1.0.1-foss-2021b spektral/1.1.0-foss-2021b-CUDA-11.4.1 TensorFlow/2.7.1-foss-2021b-CUDA-11.4.1 tqdm/4.62.3-GCCcore-11.2.0

Last modified on 17th March 2023