LEfSe 1.1-foss-2019b-Python-3.7.4

LEfSe (Linear discriminant analysis Effect Size) determines the features (organisms, clades, operational taxonomic units, genes, or functions) most likely to explain differences between classes by coupling standard tests for statistical significance with additional tests encoding biological consistency and effect relevance.

Accessing LEfSe 1.1-foss-2019b-Python-3.7.4

To load the module for LEfSe 1.1-foss-2019b-Python-3.7.4 please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load bear-apps/2022a
module load LEfSe/1.1-foss-2019b-Python-3.7.4

BEAR Apps Version

2022a

More Information

For more information visit the LEfSe website.

Dependencies

This version of LEfSe has a direct dependency on: biom-format/2.1.8-foss-2019b-Python-3.7.4 foss/2019b matplotlib/3.1.1-foss-2019b-Python-3.7.4 Python/3.7.4-GCCcore-8.3.0 R/3.6.2-foss-2019b rpy2/3.2.6-foss-2019b-Python-3.7.4 SciPy-bundle/2019.10-foss-2019b-Python-3.7.4

Last modified on 25th September 2020