NanoMod 0.2.2-foss-2019b-Python-2.7.16

NanoMod is a novel computational tool for the detection of DNA modifications using Nanopore long-read sequencing data. The evaluation on simulation data with different types of modifications and on a methylation data of E. coli suggested that NanoMod achieved better performance than other existing tools in detecting modifications without training data.

Accessing NanoMod 0.2.2-foss-2019b-Python-2.7.16

To load the module for NanoMod 0.2.2-foss-2019b-Python-2.7.16 please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load bear-apps/2022a
module load NanoMod/0.2.2-foss-2019b-Python-2.7.16

BEAR Apps Version

2022a

More Information

For more information visit the NanoMod website.

Dependencies

This version of NanoMod has a direct dependency on: BWA/0.7.17-GCC-8.3.0 foss/2019b h5py/2.10.0-foss-2019b-Python-2.7.16 HDF5/1.10.5-gompi-2019b Python/2.7.16-GCCcore-8.3.0 R/3.6.2-foss-2019b rpy2/2.8.6-foss-2019b-Python-2.7.16 SciPy-bundle/2019.10-foss-2019b-Python-2.7.16

Last modified on 27th July 2020