RNA-SeQC 1.1.8-foss-2019b-Java-11

There is a newer version of RNA-SeQC

RNA-SeQC is a java program which computes a series of quality control metrics for RNA-seq data. The input can be one or more BAM files. The output consists of HTML reports and tab delimited files of metrics data. This program can be valuable for comparing sequencing quality across different samples or experiments to evaluate different experimental parameters. It can also be run on individual samples as a means of quality control before continuing with downstream analysis.

Accessing RNA-SeQC 1.1.8-foss-2019b-Java-11

To load the module for RNA-SeQC 1.1.8-foss-2019b-Java-11 please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load bear-apps/2022a
module load RNA-SeQC/1.1.8-foss-2019b-Java-11

BEAR Apps Version


More Information

For more information visit the RNA-SeQC website.


This version of RNA-SeQC has a direct dependency on: BWA/0.7.17-GCC-8.3.0 foss/2019b Java/11

Required By

This version of RNA-SeQC is a direct dependent of: gtex-pipeline/gtex_v8-foss-2019b-Python-3.7.4-R-3.6.2

Other Versions

These versions of RNA-SeQC are available on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Version BEAR Apps Version
2.4.2-foss-2021a 2021a

Last modified on 17th June 2020