Salmon 1.1.0-gompi-2019b

There is a newer version of Salmon

Salmon is a wicked-fast program to produce a highly-accurate, transcript-level quantification estimates from RNA-seq data.

Accessing Salmon 1.1.0-gompi-2019b

To load the module for Salmon 1.1.0-gompi-2019b please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load bear-apps/2022a
module load Salmon/1.1.0-gompi-2019b

BEAR Apps Version

2022a

More Information

For more information visit the Salmon website.

Dependencies

This version of Salmon has a direct dependency on: Boost/1.71.0-gompi-2019b gompi/2019b tbb/2019_U9-GCCcore-8.3.0

Required By

This version of Salmon is a direct dependent of: funannotate/1.8.1-foss-2019b-Python-2.7.16 funannotate/1.8.1-foss-2019b-Python-3.7.4 Trinity/2.9.1-foss-2019b-Python-2.7.16 Trinity/2.9.1-foss-2019b-Python-3.7.4

Other Versions

These versions of Salmon are available on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 12th October 2020