cellassign 520de59-foss-2019b-Python-3.7.4-R-3.6.2

Automated, probabilistic assignment of cell types in scRNA-seq data

Accessing cellassign 520de59-foss-2019b-Python-3.7.4-R-3.6.2

To load the module for cellassign 520de59-foss-2019b-Python-3.7.4-R-3.6.2 please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load bear-apps/2022a
module load cellassign/520de59-foss-2019b-Python-3.7.4-R-3.6.2

BEAR Apps Version

2022a

Extensions

  • cellassign 520de59
  • tfprobability 0.8.0.0

More Information

For more information visit the cellassign website.

Dependencies

This version of cellassign has a direct dependency on: foss/2019b Python/3.7.4-GCCcore-8.3.0 R/3.6.2-foss-2019b R-bundle-Bioconductor/3.10-foss-2019b-R-3.6.2 R-keras/2.2.5.0-foss-2019b-Python-3.7.4-R-3.6.2 tensorflow_probability/0.8.0-foss-2019b-Python-3.7.4

Required By

This version of cellassign is a direct dependent of: BEAR-R-bio/2019b-foss-2019b-R-3.6.2

Last modified on 13th January 2020