gtex-pipeline gtex_v8-foss-2019b-Python-3.7.4-R-3.6.2

GTEx & TOPMed data production and analysis pipelines.

Accessing gtex-pipeline gtex_v8-foss-2019b-Python-3.7.4-R-3.6.2

To load the module for gtex-pipeline gtex_v8-foss-2019b-Python-3.7.4-R-3.6.2 please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load bear-apps/2022a
module load gtex-pipeline/gtex_v8-foss-2019b-Python-3.7.4-R-3.6.2

BEAR Apps Version

2022a

More Information

For more information visit the gtex-pipeline website.

Dependencies

This version of gtex-pipeline has a direct dependency on: FastQTL/2.184_gtex-47180b9-foss-2019b-Python-3.7.4-R-3.6.2 foss/2019b picard/2.21.1-Java-11 Python/3.7.4-GCCcore-8.3.0 R/3.6.2-foss-2019b RNA-SeQC/1.1.8-foss-2019b-Java-11 RSEM/1.3.2-foss-2019b STAR/2.7.2b-GCC-8.3.0

Last modified on 17th June 2020