monocle 2.28.0-foss-2022b-R-4.3.1

The monocle package provides a toolkit for analyzing single cell gene expression experiments. This vignette provides an overview of a single cell RNA-Seq analysis workflow with Monocle

Accessing monocle 2.28.0-foss-2022b-R-4.3.1

To load the module for monocle 2.28.0-foss-2022b-R-4.3.1 please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load bear-apps/2022a
module load monocle/2.28.0-foss-2022b-R-4.3.1

BEAR Apps Version



  • biocViews 1.68.1
  • DDRTree 0.1.5
  • HSMMSingleCell 1.20.0
  • leidenbase 0.1.25
  • monocle 2.28.0

More Information

For more information visit the monocle website.


This version of monocle has a direct dependency on: foss/2022b R/4.3.1-foss-2022b R-bundle-Bioconductor/3.17-foss-2022b-R-4.3.1

Required By

This version of monocle is a direct dependent of: BEAR-R-bio/2022b-foss-2022b-R-4.3.1

Other Versions

These versions of monocle are available on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Version BEAR Apps Version
2.24.1-foss-2021b-R-4.2.0 2021b

Last modified on 27th July 2023