panaroo 1.3.2-foss-2021b

A pangenome analysis pipeline.

Accessing panaroo 1.3.2-foss-2021b

To load the module for panaroo 1.3.2-foss-2021b please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load bear-apps/2022a
module load panaroo/1.3.2-foss-2021b

BEAR Apps Version

2022a

Extensions

  • argcomplete 2.0.0
  • argh 0.27.2
  • biocode 0.10.0
  • gffutils 0.11.1
  • intbitset 3.0.2
  • panaroo 1.3.2
  • peewee 3.15.4
  • taxadb 0.12.1

More Information

For more information visit the panaroo website.

Dependencies

This version of panaroo has a direct dependency on: Biopython/1.79-foss-2021b CD-HIT/4.8.1-GCC-11.2.0 DendroPy/4.5.2-GCCcore-11.2.0 edlib/1.3.9-GCC-11.2.0 foss/2021b matplotlib/3.4.3-foss-2021b networkx/2.6.3-foss-2021b plotly.py/5.4.0-GCCcore-11.2.0 PRANK/170427-GCC-11.2.0 prokka/1.14.5-gompi-2021b pyfaidx/0.7.0-GCCcore-11.2.0 Python/3.9.6-GCCcore-11.2.0 python-igraph/0.9.8-foss-2021b scikit-learn/1.0.1-foss-2021b SciPy-bundle/2021.10-foss-2021b tqdm/4.62.3-GCCcore-11.2.0

Last modified on 10th February 2023