pavian 81d784d-foss-2019b-R-3.6.2

Pavian is a interactive browser application for analyzing and visualization metagenomics classification results from classifiers such as Kraken, Centrifuge and MetaPhlAn. Pavian also provides an alignment viewer for validation of matches to a particular genome.

Accessing pavian 81d784d-foss-2019b-R-3.6.2

To load the module for pavian 81d784d-foss-2019b-R-3.6.2 please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load bear-apps/2022a
module load pavian/81d784d-foss-2019b-R-3.6.2

BEAR Apps Version

2022a

Extensions

  • d3r 0.9.0
  • pavian 81d784d
  • rhandsontable 0.3.7
  • sankeyD3 fd50a74
  • shinyFileTree 76c44e7
  • shinyjs 1.1
  • shinyWidgets 0.5.3

More Information

For more information visit the pavian website.

Dependencies

This version of pavian has a direct dependency on: foss/2019b Pandoc/2.5 R/3.6.2-foss-2019b R-bundle-Bioconductor/3.10-foss-2019b-R-3.6.2

Last modified on 25th June 2020