sequenza-utils 3.0.0-foss-2022b

Sequenza-utils is The supporting python library for the sequenza R package. Sequenza is a software for the estimation and quantification of purity/ploidy and copy number alteration in sequencing experiments of tumor samples. Sequenza-utils provide command lines programs to transform common NGS file format - such as BAM, pileup and VCF - to input files for the R package.

Accessing sequenza-utils 3.0.0-foss-2022b

To load the module for sequenza-utils 3.0.0-foss-2022b please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load bear-apps/2022a
module load sequenza-utils/3.0.0-foss-2022b

BEAR Apps Version

2022a

More Information

For more information visit the sequenza-utils website.

Dependencies

This version of sequenza-utils has a direct dependency on: foss/2022b HTSlib/1.17-GCC-12.2.0 Python/3.10.8-GCCcore-12.2.0 R/4.3.1-foss-2022b SAMtools/1.17-GCC-12.2.0 sequenza/3.0.0-foss-2022b

Required By

This version of sequenza-utils is a direct dependent of: BEAR-Python-MSc-Bioinformatics/2022b-foss-2022b

Other Versions

These versions of sequenza-utils are available on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 9th August 2023