sequenza 3.0.0-foss-2022b

Tools to analyze genomic sequencing data from paired normal-tumor samples, including cellularity and ploidy estimation; mutation and copy number (allele-specific and total copy number) detection, quantification and visualization.

Accessing sequenza 3.0.0-foss-2022b

To load the module for sequenza 3.0.0-foss-2022b please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load bear-apps/2022a
module load sequenza/3.0.0-foss-2022b

BEAR Apps Version

2022a

Extensions

  • copynumber 1.36.0
  • iotools-0.3-2
  • seqminer 8.4
  • sequenza 3.0.0
  • squash 1.0.9

More Information

For more information visit the sequenza website.

Dependencies

This version of sequenza has a direct dependency on: foss/2022b Pandoc/2.13 R/4.3.1-foss-2022b R-bundle-Bioconductor/3.17-foss-2022b-R-4.3.1

Required By

This version of sequenza is a direct dependent of: sequenza-utils/3.0.0-foss-2022b

Other Versions

These versions of sequenza are available on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 9th August 2023