VSEARCH 2.30.0-GCC-13.3.0

VSEARCH supports de novo and reference based chimera detection, clustering, full-length and prefix dereplication, rereplication, reverse complementation, masking, all-vs-all pairwise global alignment, exact and global alignment searching, shuffling, subsampling and sorting. It also supports FASTQ file analysis, filtering, conversion and merging of paired-end reads.

Accessing VSEARCH 2.30.0-GCC-13.3.0

To load the module for VSEARCH 2.30.0-GCC-13.3.0 please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2024a
module load VSEARCH/2.30.0-GCC-13.3.0

BEAR Apps Version

2024a

Architectures

EL8-emeraldrapids — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two parts: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the VSEARCH website.

Dependencies

This version of VSEARCH has a direct dependency on: bzip2/1.0.8-GCCcore-13.3.0 GCC/13.3.0 zlib/1.3.1-GCCcore-13.3.0

Required By

This version of VSEARCH is a direct dependent of: pRESTO/0.7.4-foss-2024a

Other Versions

These versions of VSEARCH are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 18th July 2025