Installed Applications: 2019b and EL8-haswell

Applications available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). All 2019b or EL8-haswell applications. In any one job, or session, you should use applications from only one BEAR Apps Version.

Some of the nodes of this architecture have GPUs. The applications that run on the GPU nodes will usually have CUDA or fosscuda as part of the version. Please see the GPU information page for details about the available GPUs and targetting jobs to specific GPU types. The available GPU types are:

  • NVIDIA P100
Application Version
acl 2.2.53-GCCcore-8.3.0
aenet 2.0.4-foss-2019b-Python-3.7.4
aenet 2.0.4-foss-2019b-mpi
almosthere 1.0.10-GCCcore-8.3.0
alsa-lib 1.2.4
ant 1.10.7-Java-11
ANTs 2.3.4-foss-2019b-Python-3.7.4
any2fasta 0.4.2-GCCcore-8.3.0
archspec 0.1.0-GCCcore-8.3.0-Python-3.7.4
Armadillo 9.900.2-foss-2019b
arpack-ng 3.7.0-foss-2019b
Arrow 0.16.0-foss-2019b-Python-3.7.4
ASE 3.19.1-iomkl-2019b-Python-3.7.4
ASE 3.19.1-foss-2019b-Python-3.7.4
assimp 5.0.1-GCCcore-8.3.0
astropy 4.0-fosscuda-2019b-Python-3.7.4
astropy 4.0-foss-2019b-Python-3.7.4
ATAT 3_36-iomkl-2019b
ATK 2.34.1-GCCcore-8.3.0
at-spi2-atk 2.34.1-GCCcore-8.3.0
at-spi2-core 2.34.0-GCCcore-8.3.0
AUCell 1.8.0-foss-2019b-R-3.6.2
AugmentedAutoencoder 0c8100f-fosscuda-2019b-Python-3.7.4
AUGUSTUS 3.3.3-foss-2019b
Autoconf 2.69-GCCcore-8.3.0
AutoDock 4.2.6-GCC-8.3.0
AutoDock_Vina 1.1.2_linux_x86
Automake 1.16.1-GCCcore-8.3.0
Autotools 20180311-GCCcore-8.3.0
BamTools 2.5.1-GCC-8.3.0
basemap 1.2.1-foss-2019b-Python-3.7.4
Bazel 2.0.0-GCCcore-8.3.0
Bazel 0.26.1-GCCcore-8.3.0
BBMap 38.87-GCC-8.3.0
BCFtools 1.10.2-GCC-8.3.0
Beagle 5.1-25Nov19.28d-Java-11
BEAR-Python-DataScience 2019b-fosscuda-2019b-Python-3.7.4
BEAR-Python-DataScience 2019b-foss-2019b-Python-3.7.4
BEAR-Python-DataScience 2019b-foss-2019b-Python-2.7.16
BEAR-Python-Sciences 2019b-foss-2019b-Python-3.7.4
BEAR-R-bio 2019b-fosscuda-2019b-R-3.6.2
BEAR-R-bio 2019b-foss-2019b-R-3.6.2
BEAR-R-geo 2019b-fosscuda-2019b-R-3.6.2
BEAR-R-geo 2019b-foss-2019b-R-3.6.2
BeautifulSoup 4.8.2-GCCcore-8.3.0
BEDTools 2.29.2-GCC-8.3.0
BGEN 1.1.6-GCCcore-8.3.0
binutils 2.32-GCCcore-8.3.0
binutils 2.32
Bio-DB-BigFile 1.07-foss-2019b-Perl-5.30.0
Bio-DB-BigFile-jksrc v395-foss-2019b
Bio-DB-HTS 3.01-GCCcore-8.3.0-Perl-5.30.0
biofluff 3.0.3-foss-2019b-Python-3.7.4
biofluff 2.1.4-foss-2019b-Python-2.7.16
BIOMASS 2.1.3-foss-2019b-R-3.6.2
biom-format 2.1.8-foss-2019b-Python-3.7.4
BioPerl 1.7.2-GCCcore-8.3.0-Perl-5.30.0
BioPerl 1.7.2-GCCcore-8.3.0
Biopython 1.75-foss-2019b-Python-3.7.4
Biopython 1.75-foss-2019b-Python-2.7.16
Bismark 0.22.3-foss-2019b
Bison 3.3.2-GCCcore-8.3.0
Bison 3.3.2
Bison 3.0.4
BLAST+ 2.9.0-gompi-2019b
BLAT 3.5-GCCcore-8.3.0
Blosc 1.17.1-GCCcore-8.3.0
bokeh 1.4.0-fosscuda-2019b-Python-3.7.4
bokeh 1.4.0-foss-2019b-Python-3.7.4
Boost 1.71.0-gompic-2019b
Boost 1.71.0-gompi-2019b
Boost.Python 1.71.0-gompi-2019b
Bowtie 1.2.3-GCC-8.3.0
Bowtie2 2.3.5.1-GCC-8.3.0
Bracken 2.6.0-foss-2019b-Python-3.7.4
BUSCO 4.0.5-foss-2019b-Python-3.7.4
BWA 0.7.17-GCC-8.3.0
bzip2 1.0.8-GCCcore-8.3.0
cairo 1.16.0-GCCcore-8.3.0
canu 1.9-GCCcore-8.3.0-Perl-5.30.0
CapnProto 0.8.0-GCCcore-8.3.0
Cartopy 0.18.0-foss-2019b-Python-3.7.4
CATALYST 1.10.3-foss-2019b-R-3.6.2
cba 0.2-21-foss-2019b-R-3.6.2
CD-HIT 4.8.1-GCC-8.3.0
cdsapi 0.2.7-foss-2019b-Python-3.7.4
cellassign 520de59-fosscuda-2019b-Python-3.7.4-R-3.6.2
cellassign 520de59-foss-2019b-Python-3.7.4-R-3.6.2
cellphonedb 2.1.1-foss-2019b-Python-3.7.4-R-3.6.2
Centrifuge 1.0.4-beta-gompi-2019b
ceres-solver 1.14.0-foss-2019b
CFITSIO 3.47-GCCcore-8.3.0
cf-plot 3.0.6-foss-2019b-Python-3.7.4
cf-python 3.4.0-foss-2019b-Python-3.7.4
CGAL 4.14.1-foss-2019b-Python-3.7.4
cgat 0.6.5-foss-2019b-Python-3.7.4
Clang 9.0.1-GCCcore-8.3.0
Clang 9.0.1-GCC-8.3.0-CUDA-10.1.243
CLHEP 2.4.1.3-foss-2019b
clingo 5.4.0-GCCcore-8.3.0-Python-3.7.4
ClustalW2 2.1-foss-2019b
ClusterR 1.2.1-foss-2019b-R-3.6.2
clustrd 1.3.7-foss-2019b-R-3.6.2
CMake 3.15.3-GCCcore-8.3.0
CNVnator 0.4.1-foss-2019b-Python-3.7.4
code-server 2.1698
CodingQuarry 2.0-GCC-8.3.0
colorRamps 2.3-foss-2019b-R-3.6.2
commonmark 0.9.1-GCCcore-8.3.0-Python-3.7.4
Coreutils 8.32-GCCcore-8.3.0
CSTools 3.1.0-foss-2019b-R-3.6.2
ctffind 4.1.14-fosscuda-2019b
ctffind 4.1.14-foss-2019b
CUDA 8.0.61
CUDA 10.1.243-iccifort-2019.5.281
CUDA 10.1.243-GCC-8.3.0
CUDA 10.1.243
cuDNN 7.6.4.38-gcccuda-2019b
cURL 7.66.0-GCCcore-8.3.0
cutadapt 2.7-GCCcore-8.3.0-Python-3.7.4
dask 2.8.0-fosscuda-2019b-Python-3.7.4
dask 2.8.0-foss-2019b-Python-3.7.4
dateutils 0.4.7-GCCcore-8.3.0
DB 18.1.32-GCCcore-8.3.0
DBD-mysql 4.050-foss-2019b-Perl-5.30.0
DBus 1.13.12-GCCcore-8.3.0
Deepbinner c261ae9-foss-2019b-Python-3.7.4
DendroPy 4.4.0-GCCcore-8.3.0
detectron2 0.1.2-fosscuda-2019b-Python-3.7.4
detectron2 0.1.1-fosscuda-2019b-Python-3.7.4
DIAMOND 0.9.30-GCC-8.3.0
DiffBind 2.14.0-foss-2019b-R-3.6.2
DirichletMultinomial 1.28.0-foss-2019b-R-3.6.2
double-conversion 3.1.4-GCCcore-8.3.0
DoubletFinder 20200901-foss-2019b-R-3.6.2
Doxygen 1.8.16-GCCcore-8.3.0
dropEst 0.8.6-foss-2019b-R-3.6.2
Dynare 4.6.3-foss-2019b
edlib 1.3.8.post1-foss-2019b-Python-3.7.4
eggnog-mapper 1.0.3-foss-2019b-Python-2.7.16
Eigen 3.3.7
elastool 7199f7a-iomkl-2019b-Python-3.7.4-VASP-5.4.4
ELPA 2019.11.001-iomkl-2019b
ELPA 2019.11.001-foss-2019b
ESMF 8.0.1-foss-2019b
ESMPy 8.0.1-foss-2019b-Python-3.7.4
ETE 3.1.2-foss-2019b-Python-3.7.4
ETE 3.1.2-foss-2019b-Python-2.7.16
EVidenceModeler 1.1.1-GCCcore-8.3.0
Exonerate 2.4.0-GCC-8.3.0
expat 2.2.7-GCCcore-8.3.0
eXpress 1.5.3-foss-2019b
FASTA 36.3.8h_04-May-2020-foss-2019b
fasterize 1.0.2-foss-2019b-R-3.6.2
fastp 0.20.1-GCC-8.3.0
FastQC 0.11.9-Java-11
FastQ_Screen 0.14.1-foss-2019b-Perl-5.30.0
FastQTL 2.184_gtex-47180b9-foss-2019b-Python-3.7.4-R-3.6.2
FASTX-Toolkit 0.0.14-GCCcore-8.3.0
FD 1.0-12-foss-2019b-R-3.6.2
FFmpeg 4.2.1-GCCcore-8.3.0
FFTW 3.3.8-gompic-2019b
FFTW 3.3.8-gompi-2019b
fgeo 1.1.4-foss-2019b-R-3.6.2
file 5.38-GCCcore-8.3.0
fineSTRUCTURE 4.1.1-foss-2019b
fineSTRUCTURE 4.0.1-foss-2019b
Fiona 1.8.13-foss-2019b-Python-3.7.4
FLASH 1.2.11-GCC-8.3.0
flashpca 20200910-foss-2019b
flex 2.6.4-GCCcore-8.3.0
flex 2.6.4
FLTK 1.3.5-GCC-8.3.0
Flye 2.6-fosscuda-2019b-Python-3.7.4
Flye 2.6-foss-2019b-Python-3.7.4
fontconfig 2.13.1-GCCcore-8.3.0-libpng-1.2.58
fontconfig 2.13.1-GCCcore-8.3.0
foss 2019b
fosscuda 2019b
freeglut 3.2.1-GCCcore-8.3.0
freetype 2.10.1-GCCcore-8.3.0-libpng-1.2.58
freetype 2.10.1-GCCcore-8.3.0
FriBidi 1.0.5-GCCcore-8.3.0
funannotate 1.8.1-foss-2019b-Python-3.7.4
funannotate 1.8.1-foss-2019b-Python-2.7.16
fuzzywuzzy 0.18.0-foss-2019b-Python-3.7.4
GAMESS-US 20190930-R2-foss-2019b
GATE 9.0-foss-2019b-Python-3.7.4
Gaussian 09
GBJ 0.5.0-foss-2019b-R-3.6.2
GBOOST 2-fosscuda-2019b
gc 7.6.12-GCCcore-8.3.0
GCC 8.3.0-2.32
GCC 8.3.0
GCCcore 8.3.0
gcccuda 2019b
GCPy 1.0.3-foss-2019b-Python-3.7.4
gcta 1.93.2-foss-2019b
Gctf 1.06
GDAL 3.0.2-foss-2019b-Python-3.7.4
GDGraph 1.54-foss-2019b-Perl-5.30.0
Gdk-Pixbuf 2.38.2-GCCcore-8.3.0
Geant4 10.06.p03-foss-2019b
Geant4-data 20210510
GeneMark-ET 4.61-GCCcore-8.3.0
GeneSplicer 20130312-foss-2019b
GeoMxNGSPipeline 2.0
geopandas 0.8.1-foss-2019b-Python-3.7.4
GEOS 3.8.0-fosscuda-2019b-Python-3.7.4
GEOS 3.8.0-foss-2019b-Python-3.7.4
gettext 0.20.1-GCCcore-8.3.0
gettext 0.19.8.1
gffread 0.11.6-GCCcore-8.3.0
gflags 2.2.2-GCCcore-8.3.0
Ghostscript 9.50-GCCcore-8.3.0
giflib 5.2.1-GCCcore-8.3.0
git 2.23.0-GCCcore-8.3.0-nodocs
GL2PS 1.4.0-GCCcore-8.3.0
glew 2.1.0-GCCcore-8.3.0
GLFW 3.3.2-GCCcore-8.3.0
GLib 2.62.0-GCCcore-8.3.0
GlimmerHMM 3.0.4c-GCC-8.3.0
GLM 0.9.9.8-GCCcore-8.3.0
GlobalArrays 5.7.2-iomkl-2019b-peigs
Globus-CLI 1.11.0-GCCcore-8.3.0-Python-3.7.4
glog 0.4.0-GCCcore-8.3.0
GLPK 4.65-GCCcore-8.3.0
GMAP-GSNAP 2020-09-12-foss-2019b
GMP 6.1.2-GCCcore-8.3.0
gnuplot 5.2.8-GCCcore-8.3.0
GObject-Introspection 1.63.1-GCCcore-8.3.0-Python-3.7.4
GObject-Introspection 1.58.3-GCCcore-8.3.0-Python-2.7.16
gompi 2019b
gompic 2019b
googletest 1.10.0-GCCcore-8.3.0
gperf 3.1-GCCcore-8.3.0
gperftools 2.7.90-GCCcore-8.3.0
GPflow 2.1.1-fosscuda-2019b-Python-3.7.4-TensorFlow-2.2.0
GPflow 2.1.1-foss-2019b-Python-3.7.4-TensorFlow-2.2.0
graphite2 1.3.14-GCCcore-8.3.0
GROMACS 2019.6-foss-2019b
GSL 2.6-iomkl-2019b
GSL 2.6-GCC-8.3.0
GST-plugins-base 1.16.2-GCC-8.3.0
GStreamer 1.16.2-GCC-8.3.0
gtex-pipeline gtex_v8-foss-2019b-Python-3.7.4-R-3.6.2
GTK+ 3.24.13-GCCcore-8.3.0
GTOOL 0.7.5
Guile 1.8.8-GCCcore-8.3.0
Gurobi 9.0.0
gzip 1.10-GCCcore-8.3.0
h5py 2.10.0-iomkl-2019b-Python-3.7.4
h5py 2.10.0-fosscuda-2019b-Python-3.7.4
h5py 2.10.0-foss-2019b-Python-3.7.4
h5py 2.10.0-foss-2019b-Python-2.7.16
Hadoop 2.10.0-GCCcore-8.3.0-native
Hail 0.2.61-foss-2019b-Python-3.7.4-Java-1.8
HarfBuzz 2.6.4-GCCcore-8.3.0
harmony 0.1-foss-2019b-R-3.6.2
HDDM 0.7.6-foss-2019b-Python-3.7.4
HDF5 1.10.5-iompi-2019b
HDF5 1.10.5-gompic-2019b
HDF5 1.10.5-gompi-2019b
hdf5storage 0.1.15-fosscuda-2019b-Python-3.7.4
hdf5storage 0.1.15-foss-2019b-Python-3.7.4
help2man 1.47.8-GCCcore-8.3.0
help2man 1.47.4
HEXPRESS 8.1
HISAT2 2.2.1-foss-2019b
HMMER 3.2.1-gompi-2019b
HOMER 4.11-foss-2019b
Horovod 0.21.1-fosscuda-2019b-TensorFlow-2.2.0-Python-3.7.4
Horovod 0.21.1-fosscuda-2019b-PyTorch-1.4.0-Python-3.7.4
HPL 2.3-iomkl-2019b
HPL 2.3-foss-2019b
HTSeq 0.12.4-foss-2019b-Python-3.7.4
HTSeq 0.12.4-foss-2019b-Python-2.7.16
HTSlib 1.10.2-GCCcore-8.3.0
hwloc 1.11.12-GCCcore-8.3.0
hypothesis 4.44.2-GCCcore-8.3.0-Python-3.7.4
iccifort 2019.5.281
iccifortcuda 2019b
ICU 65.1-GCCcore-8.3.0
ICU 64.2-GCCcore-8.3.0
igraph 0.8.0-foss-2019b
iimpic 2019b
IJulia 1.21.1-foss-2019b-Julia-1.4.0-Python-3.7.4
imageio 2.6.1-fosscuda-2019b-Python-3.7.4
imageio 2.6.1-foss-2019b-Python-3.7.4
imageio-ffmpeg 0.3.0-fosscuda-2019b-Python-3.7.4
imageio-ffmpeg 0.3.0-foss-2019b-Python-3.7.4
ImageMagick 7.0.9-5-GCCcore-8.3.0
imgaug 0.4.0-fosscuda-2019b-Python-3.7.4
imgaug 0.4.0-foss-2019b-Python-3.7.4
imkl 2019.5.281-iompic-2019b
imkl 2019.5.281-iompi-2019b
imkl 2019.5.281-gompi-2019b
impi 2019.7.217-iccifortcuda-2019b
impi 2019.7.217-iccifort-2019.5.281
impi 2018.5.288-iccifortcuda-2019b
impi 2018.5.288-iccifort-2019.5.281
IMPUTE2 2.3.2_x86_64_static
intelcuda 2019b
InterProScan 5.31-70.0-GCCcore-8.3.0-Python-3.7.4-Java-1.8
intltool 0.51.0-GCCcore-8.3.0
ioapi 3.2-2020111-gompi-2019b-nocpl
iomkl 2019b
iomklc 2019b
iompi 2019b
iompic 2019b
ipdb 0.12.3-fosscuda-2019b-Python-3.7.4
IPython 7.9.0-fosscuda-2019b-Python-3.7.4
IPython 7.9.0-foss-2019b-Python-3.7.4
IPython 5.10.0-foss-2019b-Python-2.7.16
iRF 3.0.0-foss-2019b-R-3.6.2
iRF 2.0.0-foss-2019b-R-3.6.2
IRkernel 1.1-fosscuda-2019b-R-3.6.2-Python-3.7.4
IRkernel 1.1-foss-2019b-R-3.6.2-Python-3.7.4
ITK 5.0.1-foss-2019b-Python-3.7.4
JasPer 2.0.14-GCCcore-8.3.0
Java 1.8.0_221
Java 1.8
Java 11.0.2
Java 11
JAX 0.1.77-fosscuda-2019b-Python-3.7.4
jbigkit 2.1-GCCcore-8.3.0
Jellyfish 2.3.0-GCC-8.3.0
jemalloc 5.2.1-GCCcore-8.3.0
Judy 1.0.5-GCCcore-8.3.0
Julia 1.4.0-linux-x86_64
JupyterLab 2.2.8-fosscuda-2019b-Python-3.7.4
JupyterLab 2.2.8-foss-2019b-Python-3.7.4
JupyterLab 1.2.5-fosscuda-2019b-Python-3.7.4
JupyterLab 1.2.5-foss-2019b-Python-3.7.4
kallisto 0.46.1-foss-2019b
Kendall 2.2-foss-2019b-R-3.6.2
Kent_tools 401-foss-2019b
Keras 2.3.1-fosscuda-2019b-Python-3.7.4
Keras 2.3.1-foss-2019b-TensorFlow-1.15.0-Python-3.7.4
Keras 2.3.1-foss-2019b-Python-3.7.4
keras-tuner 1.0.2-fosscuda-2019b-Python-3.7.4
keras-tuner 1.0.2-foss-2019b-Python-3.7.4
kim-api 2.1.3-iomkl-2019b
kim-api 2.1.3-foss-2019b
KMC 3.1.2rc1-GCC-8.3.0-Python-3.7.4
KneadData 0.7.6-foss-2019b-Python-3.7.4-Java-11
Kraken2 2.0.9-beta-gompi-2019b-Perl-5.30.0
LAME 3.100-GCCcore-8.3.0
LAMMPS 3Mar2020-iomkl-2019b-Python-3.7.4-kokkos
LAMMPS 3Mar2020-foss-2019b-Python-3.7.4-kokkos
LEfSe 1.1-foss-2019b-Python-3.7.4
leidenalg 0.8.0-foss-2019b-Python-3.7.4
libaio 0.3.111-GCCcore-8.3.0
libcerf 1.13-GCCcore-8.3.0
libdrm 2.4.99-GCCcore-8.3.0-libpng-1.2.58
libdrm 2.4.99-GCCcore-8.3.0
libepoxy 1.5.4-GCCcore-8.3.0
libevent 2.1.8
libevent 2.1.11-GCCcore-8.3.0
libffi 3.2.1-GCCcore-8.3.0
libgd 2.2.5-GCCcore-8.3.0
libgeotiff 1.5.1-GCCcore-8.3.0
libGLU 9.0.1-GCCcore-8.3.0
libgpuarray 0.7.6-fosscuda-2019b-Python-3.7.4
libgtextutils 0.7-GCCcore-8.3.0
libidn 1.35-GCCcore-8.3.0
libjpeg-turbo 2.0.3-GCCcore-8.3.0
libmatheval 1.1.11-GCCcore-8.3.0
libpciaccess 0.14-GCCcore-8.3.0
libpng 1.6.37-GCCcore-8.3.0
libpng 1.2.58-GCCcore-8.3.0
libpng 1.2.58
libreadline 8.0-GCCcore-8.3.0
libRmath 3.6.2-foss-2019b
libsndfile 1.0.28-GCCcore-8.3.0
libsodium 1.0.18-GCCcore-8.3.0
libspatialindex 1.8.5-GCCcore-8.3.0
LibTIFF 4.0.10-GCCcore-8.3.0
libtirpc 1.2.6-GCCcore-8.3.0
libtool 2.4.6-GCCcore-8.3.0
libunistring 0.9.10-GCCcore-8.3.0
libunwind 1.3.1-GCCcore-8.3.0
LibUUID 1.0.3-GCCcore-8.3.0
libxc 4.3.4-iccifort-2019.5.281
libxc 4.3.4-GCC-8.3.0
libxml2 2.9.9-GCCcore-8.3.0
libxslt 1.1.34-GCCcore-8.3.0
libyaml 0.2.2-GCCcore-8.3.0
Liftoff 1.4.2-foss-2019b-Python-3.7.4
Lighter 1.1.2-foss-2019b
limix-bgen 3.0.3-GCCcore-8.3.0
LittleCMS 2.9-GCCcore-8.3.0
LLVM 9.0.0-GCCcore-8.3.0
LLVM 8.0.1-GCCcore-8.3.0
LMDB 0.9.24-GCCcore-8.3.0
LongQC 1.0-foss-2019b-Python-3.7.4
Longshot 0.4.1-GCCcore-8.3.0
lpsolve 5.5.2.5-GCC-8.3.0
Lua 5.3.5-GCCcore-8.3.0
Lua 5.1.5-GCCcore-8.3.0
lxml 4.4.2-GCCcore-8.3.0
lz4 1.9.2-GCCcore-8.3.0
LZO 2.10-GCCcore-8.3.0
M4 1.4.18-GCCcore-8.3.0
M4 1.4.18
M4 1.4.17
MACS2 2.2.7.1-foss-2019b-Python-3.7.4
MAFFT 7.453-GCC-8.3.0-with-extensions
magma 2.5.4-fosscuda-2019b
magma 2.5.1-fosscuda-2019b
Mako 1.1.0-GCCcore-8.3.0
mappy 2.17-foss-2019b-Python-3.7.4
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MATLAB 2020a
matplotlib 3.1.1-iomkl-2019b-Python-3.7.4
matplotlib 3.1.1-fosscuda-2019b-Python-3.7.4
matplotlib 3.1.1-foss-2019b-Python-3.7.4
matplotlib 2.2.5-foss-2019b-Python-2.7.16
Maven 3.6.3
mayavi 4.7.1-foss-2019b-Python-3.7.4
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MEGAN_Calc_Code 3.1-foss-2019b
MEGAN_Preprocessor 3.1-foss-2019b
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Meson 0.51.2-GCCcore-8.3.0-Python-3.7.4
Mesquite 2.3.0-GCCcore-8.3.0
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minimap2 2.17-GCC-8.3.0
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MIRTK 20210104-fosscuda-2019b-Python-3.7.4
MIRTK 20210104-foss-2019b-Python-3.7.4
mitre 1.0b1-foss-2019b-Python-2.7.16
mlpy 3.5.0-foss-2019b-Python-2.7.16
mlst 2.19.0-foss-2019b
MNE-Python 0.20.4-foss-2019b-Python-3.7.4
molmod 1.4.5-iomkl-2019b-Python-3.7.4
molmod 1.4.5-foss-2019b-Python-3.7.4
Mono 6.8.0.105-GCCcore-8.3.0
Monocle3 0.2.1-foss-2019b-R-3.6.2
mosfit 1.1.6-foss-2019b-Python-3.7.4
MotionCor2 1.3.2-GCCcore-8.3.0
MPFR 4.0.2-GCCcore-8.3.0
MPI3SNP f03aecf-fosscuda-2019b
MPI3SNP f03aecf-foss-2019b
MRtrix 3.0-rc-20200326-foss-2019b-Python-3.7.4
MultiQC 1.9-foss-2019b-Python-3.7.4
MUSCLE 3.8.1551-GCC-8.3.0
n2v 0.1.11-fosscuda-2019b-Python-3.7.4
n2v 0.1.11-foss-2019b-Python-3.7.4
NAG FSL6I26DCL-iomkl-2019b
NAG FLL6I23DCL-iomkl-2019b
NAMD 2.14-fosscuda-2019b
NAMD 2.14-foss-2019b-mpi
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netCDF 4.7.1-gompic-2019b
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netcdf4-python 1.5.3-foss-2019b-Python-3.7.4
netCDF-C++4 4.3.1-gompi-2019b
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nettle 3.5.1-GCCcore-8.3.0
networkx 2.4-foss-2019b-Python-3.7.4
neural_renderer_pytorch 1.1.3-fosscuda-2019b-Python-3.7.4-PyTorch-1.4.0
neural_renderer_pytorch 1.1.3-fosscuda-2019b-Python-3.7.4
neuropythy 0.11.8-fosscuda-2019b-Python-3.7.4-Java-11
neuropythy 0.11.8-foss-2019b-Python-3.7.4-Java-11
NGS 2.10.4-GCCcore-8.3.0-Java-11
ngspice 31-foss-2019b
ngsplot 2.63-foss-2019b-Python-2.7.16-R-3.6.2
NiBabel 3.1.0-fosscuda-2019b-Python-3.7.4
NiBabel 3.1.0-foss-2019b-Python-3.7.4
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nodejs 12.16.1-GCCcore-8.3.0
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NSS 3.45-GCCcore-8.3.0
numactl 2.0.12-GCCcore-8.3.0
numba 0.47.0-fosscuda-2019b-Python-3.7.4
numba 0.47.0-foss-2019b-Python-3.7.4
numexpr 2.7.1-fosscuda-2019b-Python-3.7.4
numexpr 2.7.1-foss-2019b-Python-3.7.4
NWChem 7.0.0-iomkl-2019b-Python-3.7.4
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OpenCV 4.2.0-fosscuda-2019b-Python-3.7.4
OpenCV 4.2.0-foss-2019b-Python-3.7.4
OpenFOAM-Extend 4.1-20200408-foss-2019b-Python-2.7.16
OpenFOAM (OpenCFD Ltd) v1912-foss-2019b
OpenFOAM (The OpenFOAM Foundation) 6-foss-2019b
OpenJPEG 2.3.1-GCCcore-8.3.0
OpenMC 0.12.0-foss-2019b-Python-3.7.4
OpenMC 0.11.0-foss-2019b-Python-3.7.4
OpenMPI 3.1.6-iccifort-2019.5.281
OpenMPI 3.1.6-gcccuda-2019b
OpenMPI 3.1.6-GCC-8.3.0
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openpyxl 3.0.4-GCCcore-8.3.0-Python-3.7.4
open-Qmin 030900c-fosscuda-2019b
ORCA 4.2.1-gompi-2019b
orca 1.3.0-GCCcore-8.3.0
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Pandoc 2.5
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parallel 20190922-GCCcore-8.3.0
ParaView 5.6.2-foss-2019b-Python-3.7.4-mpi
ParMETIS 4.0.3-gompi-2019b
ParMGridGen 1.0-gompi-2019b
PASApipeline 2.4.1-foss-2019b
pavian 81d784d-foss-2019b-R-3.6.2
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pept 0.2.2-foss-2019b-Python-3.7.4
pept 0.1.6-foss-2019b-Python-3.7.4
Peridigm cb9979d-foss-2019b-Python-3.7.4
Perl 5.30.0-GCCcore-8.3.0
PGI 19.10-GCC-8.3.0-2.32
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picard 2.21.1-Java-11
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Pillow 6.2.1-GCCcore-8.3.0
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Pilon 1.23-Java-11
PIMD 2.4.0-foss-2019b-aenet
Pingouin 0.3.8-foss-2019b-Python-3.7.4
pixman 0.38.4-GCCcore-8.3.0
pkg-config 0.29.2-GCCcore-8.3.0
pkgconfig 1.5.1-GCCcore-8.3.0-Python-3.7.4
pkgconfig 1.5.1-GCCcore-8.3.0-Python-2.7.16
Platypus 0.8.1-GCCcore-8.3.0-Python-2.7.16
plotly.py 4.5.3-foss-2019b
PLUMED 2.5.3-iomkl-2019b-Python-3.7.4
PLUMED 2.5.3-foss-2019b-Python-3.7.4
pocl 1.4-gcccuda-2019b
pocl 1.4-GCC-8.3.0
poLCA 1.4.1-foss-2019b-R-3.6.2
poppler 0.90.1-foss-2019b
poweRlaw 0.70.6-foss-2019b-R-3.6.2
PPN2V 4e822aa-fosscuda-2019b-Python-3.7.4
PPN2V 4e822aa-foss-2019b-Python-3.7.4
presto 7f63f96-foss-2019b-R-3.6.2
PRINSEQ 0.20.4-foss-2019b-Perl-5.30.0
prodigal 2.6.3-GCCcore-8.3.0
PROJ 6.2.1-GCCcore-8.3.0
prokka 1.14.5-gompi-2019b
Proteinortho 6.0.23-foss-2019b-Python-3.7.4-Perl-5.30.0
Proteinortho 6.0.23-foss-2019b-Python-2.7.16-Perl-5.30.0
protobuf 3.10.0-GCCcore-8.3.0-static
protobuf 3.10.0-GCCcore-8.3.0
protobuf 2.5.0-GCCcore-8.3.0
pybedtools 0.8.1-foss-2019b
pybind11 2.4.3-GCCcore-8.3.0-Python-3.7.4
PyCairo 1.18.2-GCCcore-8.3.0
pycoQC 2.5.0.21-foss-2019b-Python-3.7.4
PycURL 7.43.0.5-GCCcore-8.3.0-Python-3.7.4
pyDNase 0.3.0-foss-2019b-Python-3.7.4
pyEGA3 3.4.0-GCCcore-8.3.0-Python-3.7.4
pyfasta 0.5.2-foss-2019b-Python-2.7.16
PyGEOS 0.7.1-foss-2019b-Python-3.7.4
PyMC3 3.8-foss-2019b-Python-3.7.4
PyMieScatt 1.7.5.4-foss-2019b-Python-3.7.4
PyOpenGL 3.1.5-GCCcore-8.3.0
pyproj 2.4.2-GCCcore-8.3.0-Python-3.7.4
PyQt5 5.13.1-GCCcore-8.3.0-Python-3.7.4
PyQt5 5.13.1-GCCcore-8.3.0-Python-2.7.16
Pyro 1.5.0-fosscuda-2019b-Python-3.7.4
Pyro 1.5.0-foss-2019b-Python-3.7.4
Pysam 0.15.3-GCC-8.3.0
pytabix 0.1-foss-2019b-Python-2.7.16
PyTables 3.6.1-fosscuda-2019b-Python-3.7.4
PyTables 3.6.1-foss-2019b-Python-3.7.4
Python 3.7.4-GCCcore-8.3.0
Python 2.7.16-GCCcore-8.3.0
python-bioformats 4.0.0-fosscuda-2019b-Python-3.7.4
python-bioformats 4.0.0-foss-2019b-Python-3.7.4
python-igraph 0.8.0-foss-2019b
PyTorch 1.6.0-fosscuda-2019b-Python-3.7.4
PyTorch 1.6.0-foss-2019b-Python-3.7.4
PyTorch 1.4.0-fosscuda-2019b-Python-3.7.4
PyTorch 1.4.0-foss-2019b-Python-3.7.4
PyTorch 1.3.1-fosscuda-2019b-Python-3.7.4
PyTorch 1.3.1-foss-2019b-Python-3.7.4
PyTorch3D 0.2.5-fosscuda-2019b-Python-3.7.4-PyTorch-1.6.0
PyTorch3D 0.2.0-fosscuda-2019b-Python-3.7.4-PyTorch-1.4.0
PyTorch3D 0.1.1-fosscuda-2019b-Python-3.7.4-PyTorch-1.4.0
PyTorch-Geometric 1.4.3-fosscuda-2019b-Python-3.7.4-PyTorch-1.4.0
PyTorch-Geometric 1.4.3-foss-2019b-Python-3.7.4-PyTorch-1.4.0
PyYAML 5.1.2-GCCcore-8.3.0
PyZMQ 18.1.1-foss-2019b-Python-3.7.4
QCTOOL 2.0.8-foss-2019b
Qt5 5.13.1-GCCcore-8.3.0
Qualimap 2.2.1-foss-2019b-R-3.6.2
QuantumESPRESSO 6.7-iomkl-2019b
QuantumESPRESSO 6.6-iomkl-2019b
QuantumESPRESSO 6.6-foss-2019b
R 3.6.2-fosscuda-2019b
R 3.6.2-foss-2019b
Racon 1.4.10-fosscuda-2019b
Racon 1.4.10-foss-2019b
RAxML-NG 1.0.1-gompi-2019b
R-bundle-Bioconductor 3.10-fosscuda-2019b-R-3.6.2
R-bundle-Bioconductor 3.10-foss-2019b-R-3.6.2
RDFlib 4.2.2-GCCcore-8.3.0
re2c 1.2.1-GCCcore-8.3.0
readlif 0.2.1-GCCcore-8.3.0-Python-3.7.4
refnx 0.1.17-foss-2019b-Python-3.7.4
RELION 3.1.1-fosscuda-2019b
RELION 3.1.1-foss-2019b
RepeatMasker 4.0.9-p2-gompi-2019b-HMMER
RFMIX 9505bfa-foss-2019b
rgdal 1.4-8-foss-2019b-R-3.6.2
rgeos 0.5-2-foss-2019b-R-3.6.2
R-keras 2.2.5.0-fosscuda-2019b-Python-3.7.4-R-3.6.2
R-keras 2.2.5.0-foss-2019b-Python-3.7.4-R-3.6.2
RMBlast 2.9.0-gompi-2019b
RNA-SeQC 1.1.8-foss-2019b-Java-11
RNAstructure 6.2-foss-2019b-Python-3.7.4
RNetCDF 2.3-1-foss-2019b-R-3.6.2
ROOT 6.20.00-foss-2019b-Python-3.7.4
Rosetta 3.11-foss-2019b-Python-2.7.16
rpy2 3.2.6-foss-2019b-Python-3.7.4
rpy2 2.8.6-foss-2019b-Python-2.7.16
RSEM 1.3.2-foss-2019b
rstanarm 2.21.1-foss-2019b-R-3.6.2
rstudio 1.3.959-fosscuda-2019b-R-3.6.2
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rstudio 1.2.5033-fosscuda-2019b-R-3.6.2
rstudio 1.2.5033-foss-2019b-R-3.6.2
rsync 3.2.3-GCCcore-8.3.0-Python-3.7.4
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rts 1.0-49-foss-2019b-R-3.6.2
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rworldmap 1.3-6-foss-2019b-R-3.6.2
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ScaLAPACK 2.0.2-gompic-2019b
ScaLAPACK 2.0.2-gompi-2019b
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scikit-image 0.16.2-fosscuda-2019b-Python-3.7.4
scikit-image 0.16.2-foss-2019b-Python-3.7.4
scikit-learn 0.21.3-fosscuda-2019b-Python-3.7.4
scikit-learn 0.21.3-foss-2019b-Python-3.7.4
scikit-learn 0.20.4-foss-2019b-Python-2.7.16
SciPy-bundle 2019.10-iomklc-2019b-Python-3.7.4
SciPy-bundle 2019.10-iomkl-2019b-Python-3.7.4
SciPy-bundle 2019.10-fosscuda-2019b-Python-3.7.4
SciPy-bundle 2019.10-foss-2019b-Python-3.7.4
SciPy-bundle 2019.10-foss-2019b-Python-2.7.16
SCons 3.1.1-GCCcore-8.3.0
SCOTCH 6.0.9-gompi-2019b
Scrappie 1.4.1-foss-2019b-Python-2.7.16
Scrublet 0.2.1-foss-2019b-Python-3.7.4
scVelo 0.1.25-foss-2019b-Python-3.7.4
scVelo 0.1.24-foss-2019b-Python-3.7.4
SDL2 2.0.10-GCCcore-8.3.0
Seaborn 0.9.1-foss-2019b-Python-2.7.16
Seaborn 0.10.0-foss-2019b-Python-3.7.4
SEPP 4.3.10-foss-2019b-Python-3.7.4
seqtk 1.3-GCC-8.3.0
Seurat 3.2.0-foss-2019b-R-3.6.2
Seurat 3.1.5-foss-2019b-R-3.6.2
sf 0.9-0-foss-2019b-R-3.6.2
sf 0.8-1-foss-2019b-R-3.6.2
SHAP 0.35.0-foss-2019b-Python-3.7.4
SHAPEIT 2.r904.glibcv2.17
Shapely 1.7.0-fosscuda-2019b-Python-3.7.4
Shapely 1.7.0-foss-2019b-Python-3.7.4
shovill 1.1.0-foss-2019b-Python-3.7.4
Signac 1.0.0-foss-2019b-R-3.6.2
Signac 0.2.5-foss-2019b-R-3.6.2
SignalP 5.0b
SigProfilerMatrixGenerator 1.1.7-foss-2019b-Python-3.7.4
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SimpleITK 1.2.4-foss-2019b-Python-3.7.4
sinfo 0.3.1-GCCcore-8.3.0-Python-3.7.4
singlecellmethods 6f3a00d-foss-2019b-R-3.6.2
SingleR 1.0.6-foss-2019b-R-3.6.2
SKESA 2.4.0-foss-2019b
sklearn-crfsuite 0.3.6-foss-2019b-Python-3.7.4
SNAP 2013-11-29-GCC-8.3.0
snappy 1.1.7-GCCcore-8.3.0
snippy 4.6.0-foss-2019b-Perl-5.30.0
snpEff 4.5covid19-Java-1.8
SNPTEST 2.5.2
SoftRas f644279-fosscuda-2019b-Python-3.7.4-PyTorch-1.4.0
SoftRas f644279-fosscuda-2019b-Python-3.7.4
SoupX 1.4.8-foss-2019b-R-3.6.2
SPAdes 3.14.1-GCC-8.3.0-Python-3.7.4
spant 1.4.0-foss-2019b-R-3.6.2
Spark 2.4.1-foss-2019b-Python-3.7.4-Java-1.8
spatialreg 1.1-5-foss-2019b-R-3.6.2
Spectra 0.9.0
spglib-python 1.16.1-iomkl-2019b-Python-3.7.4
SQLite 3.29.0-GCCcore-8.3.0
SquiggleKit 4a8abb5-foss-2019b-Python-2.7.16
STAR 2.7.2b-GCC-8.3.0
statsmodels 0.11.0-foss-2019b-Python-3.7.4
statsmodels 0.10.2-foss-2019b-Python-2.7.16
StringTie 2.1.3-GCC-8.3.0
Subread 2.0.1-GCC-8.3.0
SuiteSparse 5.6.0-foss-2019b-METIS-5.1.0
SunPy 1.1.3-foss-2019b-Python-3.7.4
SWIG 4.0.1-GCCcore-8.3.0
SWIG 3.0.12-GCCcore-8.3.0
Szip 2.1.1-GCCcore-8.3.0
tantan 23-GCCcore-8.3.0
Taxonstand 2.2-foss-2019b-R-3.6.2
tbb 2019_U9-GCCcore-8.3.0
Tcl 8.6.9-GCCcore-8.3.0
TC-Python 2020a-foss-2019b-Python-3.7.4
tcsh 6.22.02-GCCcore-8.3.0
tensorboardX 2.0-fosscuda-2019b-Python-3.7.4-PyTorch-1.4.0
TensorFlow 2.2.0-fosscuda-2019b-Python-3.7.4
TensorFlow 2.2.0-foss-2019b-Python-3.7.4
TensorFlow 2.0.0-fosscuda-2019b-Python-3.7.4
TensorFlow 2.0.0-foss-2019b-Python-3.7.4
TensorFlow 1.15.0-fosscuda-2019b-Python-3.7.4
TensorFlow 1.15.0-foss-2019b-Python-3.7.4
tensorflow-probability 0.10.1-fosscuda-2019b-Python-3.7.4-TensorFlow-2.2.0
tensorflow-probability 0.10.1-foss-2019b-Python-3.7.4-TensorFlow-2.2.0
tensorflow_probability 0.8.0-fosscuda-2019b-Python-3.7.4
tensorflow_probability 0.8.0-foss-2019b-Python-3.7.4
texlive 20200406-foss-2019b
Theano 1.0.4-fosscuda-2019b-Python-3.7.4
Theano 1.0.4-foss-2019b-Python-3.7.4
Thermo-Calc 2020a-foss-2019b
tifffile 2019.7.26.2-fosscuda-2019b-Python-3.7.4
tifffile 2019.7.26.2-foss-2019b-Python-3.7.4
TIGRAMITE 4.2.0.3-foss-2019b-Python-3.7.4
time 1.9-GCCcore-8.3.0
TinyDB 3.15.2-GCCcore-8.3.0
Tk 8.6.9-GCCcore-8.3.0
Tkinter 3.7.4-GCCcore-8.3.0
Tkinter 2.7.16-GCCcore-8.3.0
tmux 3.0a
Togl 2.1-GCCcore-8.3.0
tombo 7473afe-foss-2019b-Python-3.7.4-cowplot
tombo 1.5.1-foss-2019b-Python-3.7.4
torchvision 0.7.0-fosscuda-2019b-Python-3.7.4-PyTorch-1.6.0
torchvision 0.5.0-fosscuda-2019b-Python-3.7.4-PyTorch-1.4.0
torchvision 0.4.2-fosscuda-2019b-Python-3.7.4
torchvision 0.4.2-foss-2019b-Python-3.7.4
tqdm 4.41.1-GCCcore-8.3.0
TransDecoder 5.5.0-foss-2019b-Perl-5.30.0
trend 1.1.4-foss-2019b-R-3.6.2
TRF 4.09-linux64
Trilinos 12.12.1-foss-2019b-Python-3.7.4
trimAl 1.4.1-GCC-8.3.0
trimesh 3.9.1-fosscuda-2019b-Python-3.7.4
trimesh 3.9.1-foss-2019b-Python-3.7.4
Trim_Galore 0.6.5-GCCcore-8.3.0-Java-11-Python-3.7.4
Trimmomatic 0.39-Java-11
Trinity 2.9.1-foss-2019b-Python-3.7.4
Trinity 2.9.1-foss-2019b-Python-2.7.16
tRNAscan-SE 2.0.6-GCCcore-8.3.0
TwoSampleMR 0.5.5-foss-2019b-R-3.6.2
UCX 1.6.1-GCCcore-8.3.0
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ukbtools 0.11.3-foss-2019b-R-3.6.2
uncertainties 3.1.2-foss-2019b
util-linux 2.34-GCCcore-8.3.0
UTMOST 88e9d1d-foss-2019b-Python-2.7.16-R-3.6.2
V8 3.2.0-foss-2019b-R-3.6.2
Valgrind 3.16.0-fosscuda-2019b
Valgrind 3.16.0-foss-2019b
variant_tools 3.1.3-foss-2019b-Python-3.7.4
VarScan 2.4.4-Java-1.8
VASP 5.4.4-iomklc-2019b-VTST-180-Python-3.7.4-Perl-5.30.0
VASP 5.4.4-iomklc-2019b
VASP 5.4.4-iomkl-2019b-VTST-180-Python-3.7.4-Perl-5.30.0
VASP 5.4.4-iomkl-2019b
vcf2maf 1.6.18-foss-2019b-Perl-5.30.0
Velvet 1.2.10-foss-2019b-mt-kmer_191
VEP 99.2-foss-2019b-Perl-5.30.0
VGAM 1.1-3-foss-2019b-R-3.6.2
Voro++ 0.4.6-iomkl-2019b
Voro++ 0.4.6-foss-2019b
VOTCA 1.5.1-foss-2019b
VSCode 2.1698
vt 2187ff6-foss-2019b
VTK 8.2.0-fosscuda-2019b-Python-3.7.4
VTK 8.2.0-foss-2019b-Python-3.7.4
WEKA 3.8.4-Java-11
wget 1.20.1-GCCcore-8.3.0
wkhtmltopdf 0.12.4-Linux-x86_64
WPS 4.1-foss-2019b-dmpar
WRF 4.1.3-foss-2019b-dmpar
wxWidgets 3.1.3-GCC-8.3.0
X11 20190717-GCCcore-8.3.0-libpng-1.2.58
X11 20190717-GCCcore-8.3.0
x264 20190925-GCCcore-8.3.0
x265 3.2-GCCcore-8.3.0
xarray 0.15.1-foss-2019b-Python-3.7.4
xESMF 0.3.0-foss-2019b-Python-3.7.4
xgboost 1.0.0.2-foss-2019b-R-3.6.2
XML-LibXML 2.0201-GCCcore-8.3.0
xorg-macros 1.19.2-GCCcore-8.3.0
xprop 1.2.4-GCCcore-8.3.0
Xvfb 1.20.8-GCCcore-8.3.0
xxHash 0.8.0-GCCcore-8.3.0
XZ 5.2.4-GCCcore-8.3.0
yacs 0.1.7-GCCcore-8.3.0
yaff 1.6.0-iomkl-2019b-Python-3.7.4
yaff 1.6.0-foss-2019b-Python-3.7.4
yaml-cpp 0.6.3-GCCcore-8.3.0
Yasm 1.3.0-GCCcore-8.3.0
ZeroMQ 4.3.2-GCCcore-8.3.0
Zip 3.0-GCCcore-8.3.0
zlib 1.2.11-GCCcore-8.3.0
zlib 1.2.11
zstd 1.4.4-GCCcore-8.3.0