Installed Applications: 2020b and Ubuntu20.04-haswell

Applications available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). All 2020b or Ubuntu20.04-haswell applications. In any one job, or session, you should use applications from only one BEAR Apps Version.

Application Version
alsa-lib 1.2.5.1
archive 1.1.2-foss-2020b-R-4.0.3
Autoconf 2.69-GCCcore-10.2.0
Automake 1.16.2-GCCcore-10.2.0
Autotools 20200321-GCCcore-10.2.0
basemap 1.2.2-foss-2020b
BAT 2.7.1-foss-2020b-R-4.0.3
BAT 2.6.1-foss-2020b-R-4.0.3
binutils 2.35-GCCcore-10.2.0
binutils 2.35
BiomasaFP 0.3-foss-2020b-R-4.0.3
BIOMASS 2.1.4-foss-2020b-R-4.0.3
Bison 3.7.1-GCCcore-10.2.0
Bison 3.7.1
Bison 3.5.3
Boost 1.74.0-GCC-10.2.0
bzip2 1.0.8-GCCcore-10.2.0
cairo 1.16.0-GCCcore-10.2.0
CellRanger 6.0.1
Centrifuge 1.0.4-gompi-2020b
CMake 3.18.4-GCCcore-10.2.0
cURL 7.72.0-GCCcore-10.2.0
DB 18.1.40-GCCcore-10.2.0
Doxygen 1.8.20-GCCcore-10.2.0
dplyr 1.0.6-foss-2020b-R-4.0.3
Eigen 3.3.8-GCCcore-10.2.0
expat 2.2.9-GCCcore-10.2.0
FFTW 3.3.8-gompi-2020b
fgeo 1.1.4-foss-2020b-R-4.0.3
Fiji 20201104-1356
file 5.39-GCCcore-10.2.0
flex 2.6.4-GCCcore-10.2.0
flex 2.6.4
fontconfig 2.13.92-GCCcore-10.2.0
foss 2020b
freetype 2.10.3-GCCcore-10.2.0
GATK 4.2.0.0-GCCcore-10.2.0-Java-1.8
GATK 4.2.0.0-GCCcore-10.2.0-Java-11
GCC 10.2.0
GCCcore 10.2.0
GDAL 3.2.1-foss-2020b
GEOS 3.9.1-GCC-10.2.0
gettext 0.21-GCCcore-10.2.0
gettext 0.21
ggrepel 0.9.1-foss-2020b-R-4.0.3
Ghostscript 9.53.3-GCCcore-10.2.0
GLib 2.66.1-GCCcore-10.2.0
GLPK 4.65-GCCcore-10.2.0
GMP 6.2.0-GCCcore-10.2.0
gompi 2020b
GPArotation 2014.11-1-foss-2020b-R-4.0.3
gperf 3.1-GCCcore-10.2.0
GSL 2.6-GCC-10.2.0
gzip 1.10-GCCcore-10.2.0
harmony 1.0.0-20201009-foss-2020b-R-4.0.3
HDF 4.2.15-GCCcore-10.2.0
HDF5 1.10.7-gompi-2020b
help2man 1.47.4
help2man 1.47.16-GCCcore-10.2.0
hwloc 2.2.0-GCCcore-10.2.0
hypervolume 2.0.12-foss-2020b-R-4.0.3
hypothesis 5.41.2-GCCcore-10.2.0
ICU 67.1-GCCcore-10.2.0
ImageMagick 7.0.10-35-GCCcore-10.2.0
intltool 0.51.0-GCCcore-10.2.0
IPO 1.16.0-foss-2020b
JASPAR2020 0.99.10-foss-2020b-R-4.0.3
JasPer 2.0.24-GCCcore-10.2.0
JasPer 2.0.14-GCCcore-10.2.0
Java 1.8.0_281
Java 1.8
Java 11.0.2
Java 11
jemalloc 5.2.1-GCCcore-10.2.0
kableExtra 1.3.4-foss-2020b-R-4.0.3
libarchive 3.4.3-GCCcore-10.2.0
libdrm 2.4.102-GCCcore-10.2.0
libevent 2.1.12-GCCcore-10.2.0
libffi 3.3-GCCcore-10.2.0
libgeotiff 1.6.0-GCCcore-10.2.0
libGLU 9.0.1-GCCcore-10.2.0
libglvnd 1.3.2-GCCcore-10.2.0
libiconv 1.16-GCCcore-10.2.0
libjpeg-turbo 2.0.5-GCCcore-10.2.0
libpciaccess 0.16-GCCcore-10.2.0
libpng 1.6.37-GCCcore-10.2.0
libreadline 8.0-GCCcore-10.2.0
libsndfile 1.0.28-GCCcore-10.2.0
LibTIFF 4.1.0-GCCcore-10.2.0
libtirpc 1.3.1-GCCcore-10.2.0
libtool 2.4.6-GCCcore-10.2.0
libunwind 1.4.0-GCCcore-10.2.0
libxml2 2.9.10-GCCcore-10.2.0
LittleCMS 2.11-GCCcore-10.2.0
LLVM 11.0.0-GCCcore-10.2.0
lz4 1.9.2-GCCcore-10.2.0
M4 1.4.18-GCCcore-10.2.0
M4 1.4.18
Mako 1.1.3-GCCcore-10.2.0
MashMap 20210721-foss-2020b
MATLAB 2021b
matplotlib 3.3.3-foss-2020b
mechanize 0.4.7-GCCcore-10.2.0
Mercurial 5.7.1-GCCcore-10.2.0
Mesa 20.2.1-GCCcore-10.2.0
Meson 0.55.3-GCCcore-10.2.0
motifmatchr 1.12.0-foss-2020b-R-4.0.3
NASM 2.15.05-GCCcore-10.2.0
ncbi-vdb 2.10.9-gompi-2020b
ncdf4 1.17-foss-2020b-R-4.0.3
ncurses 6.2-GCCcore-10.2.0
ncurses 6.2
netCDF 4.7.4-gompi-2020b
nettle 3.6-GCCcore-10.2.0
NGS 2.10.9-GCCcore-10.2.0
Ninja 1.10.1-GCCcore-10.2.0
NLopt 2.6.2-GCCcore-10.2.0
nodejs 12.19.0-GCCcore-10.2.0
numactl 2.0.13-GCCcore-10.2.0
openair 2.8-3-foss-2020b-R-4.0.3
OpenBLAS 0.3.12-GCC-10.2.0
OpenMPI 4.0.5-GCC-10.2.0
parallel 20210322-GCCcore-10.2.0
PCRE 8.44-GCCcore-10.2.0
PCRE2 10.35-GCCcore-10.2.0
Perl 5.32.0-GCCcore-10.2.0
Pillow 8.0.1-GCCcore-10.2.0
pixman 0.40.0-GCCcore-10.2.0
pkg-config 0.29.2-GCCcore-10.2.0
PROJ 7.2.1-GCCcore-10.2.0
pybind11 2.6.0-GCCcore-10.2.0
pyproj 3.0.1-foss-2020b
Python 3.8.6-GCCcore-10.2.0
Python 2.7.18-GCCcore-10.2.0
R 4.0.3-foss-2020b
R-bundle-Bioconductor 3.12-foss-2020b-R-4.0.3
rgdal 1.5-18-foss-2020b-R-4.0.3
rgeos 0.5-5-foss-2020b-R-4.0.3
Salmon 1.5.2-gompi-2020b
sars 1.3.5-foss-2020b-R-4.0.3
sars 1.3.4-foss-2020b-R-4.0.3
ScaLAPACK 2.1.0-gompi-2020b
SciPy-bundle 2020.11-foss-2020b
Seurat af2925c-foss-2020b-R-4.0.3
Seurat 4.0.4-foss-2020b-R-4.0.3
sf 1.0-0-foss-2020b-R-4.0.3
Signac 1.3.0-foss-2020b-R-4.0.3
Signac 1.2.1-foss-2020b-R-4.0.3-Seurat-af2925c
SQLite 3.33.0-GCCcore-10.2.0
strelka 2.9.10-foss-2020b-Python-2.7.18
Szip 2.1.1-GCCcore-10.2.0
Taxonstand 2.3-foss-2020b-R-4.0.3
tbb 2020.3-GCCcore-10.2.0
Tcl 8.6.10-GCCcore-10.2.0
TFBSTools 1.28.0-foss-2020b-R-4.0.3
Tk 8.6.10-GCCcore-10.2.0
Tkinter 3.8.6-GCCcore-10.2.0
UDUNITS 2.2.26-GCCcore-10.2.0
UnZip 6.0-GCCcore-10.2.0
util-linux 2.36-GCCcore-10.2.0
X11 20201008-GCCcore-10.2.0
xorg-macros 1.19.2-GCCcore-10.2.0
Xvfb 1.20.9-GCCcore-10.2.0
XZ 5.2.5-GCCcore-10.2.0
zlib 1.2.11-GCCcore-10.2.0
zlib 1.2.11
zstd 1.4.5-GCCcore-10.2.0