Installed Applications: 2021a and Ubuntu20.04-haswell

Applications available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). All 2021a or Ubuntu20.04-haswell applications. In any one job, or session, you should use applications from only one BEAR Apps Version.

Application Version
ant 1.10.9-Java-11
apcluster 1.4.8-foss-2021a
Autoconf 2.71-GCCcore-10.3.0
Automake 1.16.3-GCCcore-10.3.0
Autotools 20210128-GCCcore-10.3.0
BEAR-R-bio 2021a-foss-2021a-R-4.1.0
binutils 2.36.1-GCCcore-10.3.0
binutils 2.36.1
Biopython 1.79-foss-2021a
Bison 3.7.6-GCCcore-10.3.0
Bison 3.7.6
Bison 3.5.3
Boost 1.76.0-GCC-10.3.0
bzip2 1.0.8-GCCcore-10.3.0
cairo 1.16.0-GCCcore-10.3.0
CheckM 1.1.3-foss-2021a
CMake 3.20.1-GCCcore-10.3.0
cppy 1.1.0-GCCcore-10.3.0
cURL 7.76.0-GCCcore-10.3.0
DB 18.1.40-GCCcore-10.3.0
demultiplex 1.2.2-foss-2021a
DendroPy 4.5.2-GCCcore-10.3.0
docstring 1.0.0-foss-2021a
Doxygen 1.9.1-GCCcore-10.3.0
Eigen 3.3.9-GCCcore-10.3.0
EnhancedVolcano 20211028-foss-2021a-R-4.1.0
expat 2.2.9-GCCcore-10.3.0
FFTW 3.3.9-gompi-2021a
FLAC 1.3.3-GCCcore-10.3.0
flex 2.6.4
FlexiBLAS 3.0.4-GCC-10.3.0
fontconfig 2.13.93-GCCcore-10.3.0
foss 2021a
freetype 2.10.4-GCCcore-10.3.0
GCC 10.3.0
GCCcore 10.3.0
GDAL 3.3.0-foss-2021a
gdalUtils 2.0.3.2-foss-2021a-R-4.1.0
GeomxTools 1.0.0-foss-2021a-R-4.1.0
GEOS 3.9.1-GCC-10.3.0
gettext 0.21-GCCcore-10.3.0
gettext 0.21
Ghostscript 9.54.0-GCCcore-10.3.0
GLib 2.68.2-GCCcore-10.3.0
GLPK 5.0-GCCcore-10.3.0
GMP 6.2.1-GCCcore-10.3.0
gompi 2021a
gperf 3.1-GCCcore-10.3.0
groff 1.22.4-GCCcore-10.3.0
GSL 2.7-GCC-10.3.0
gzip 1.10-GCCcore-10.3.0
HDF 4.2.15-GCCcore-10.3.0
HDF5 1.10.7-gompi-2021a
help2man 1.48.3-GCCcore-10.3.0
help2man 1.47.4
HMMER 3.3.2-gompi-2021a
HTSlib 1.12-GCC-10.3.0
hwloc 2.4.1-GCCcore-10.3.0
hypothesis 6.13.1-GCCcore-10.3.0
iClusterPlus 1.28.0-foss-2021a
ICU 69.1-GCCcore-10.3.0
ImageMagick 7.0.11-14-GCCcore-10.3.0
intltool 0.51.0-GCCcore-10.3.0
ISA-L 2.30.0-GCCcore-10.3.0
JasPer 2.0.28-GCCcore-10.3.0
Java 11.0.2
Julia 1.6.3-linux-x86_64
libarchive 3.5.1-GCCcore-10.3.0
libdrm 2.4.106-GCCcore-10.3.0
libevent 2.1.12-GCCcore-10.3.0
libffi 3.3-GCCcore-10.3.0
libgeotiff 1.6.0-GCCcore-10.3.0
libgit2 1.1.0-GCCcore-10.3.0
libGLU 9.0.1-GCCcore-10.3.0
libglvnd 1.3.3-GCCcore-10.3.0
libiconv 1.16-GCCcore-10.3.0
libjpeg-turbo 2.0.6-GCCcore-10.3.0
libogg 1.3.4-GCCcore-10.3.0
libpciaccess 0.16-GCCcore-10.3.0
libpng 1.6.37-GCCcore-10.3.0
libreadline 8.1-GCCcore-10.3.0
libsndfile 1.0.31-GCCcore-10.3.0
LibTIFF 4.2.0-GCCcore-10.3.0
libtirpc 1.3.2-GCCcore-10.3.0
libtool 2.4.6-GCCcore-10.3.0
libunwind 1.4.0-GCCcore-10.3.0
libvorbis 1.3.7-GCCcore-10.3.0
libxml2 2.9.10-GCCcore-10.3.0
LittleCMS 2.12-GCCcore-10.3.0
LLVM 11.1.0-GCCcore-10.3.0
log4r 0.4.2-foss-2021a
lz4 1.9.3-GCCcore-10.3.0
M4 1.4.18-GCCcore-10.3.0
M4 1.4.18
MAGeCK 0.5.9.4-foss-2021a
makeinfo 6.7-GCCcore-10.3.0-minimal
Mako 1.1.4-GCCcore-10.3.0
matplotlib 3.4.2-foss-2021a
Mesa 21.1.1-GCCcore-10.3.0
Meson 0.58.0-GCCcore-10.3.0
NASM 2.15.05-GCCcore-10.3.0
ncdf4 1.17-foss-2021a-R-4.1.0
ncurses 6.2-GCCcore-10.3.0
ncurses 6.2
netCDF 4.8.0-gompi-2021a
nettle 3.7.2-GCCcore-10.3.0
Ninja 1.10.2-GCCcore-10.3.0
NLopt 2.7.0-GCCcore-10.3.0
nodejs 14.17.0-GCCcore-10.3.0
numactl 2.0.14-GCCcore-10.3.0
OpenBLAS 0.3.15-GCC-10.3.0
OpenMPI 4.1.1-GCC-10.3.0
OpenSSL 1.1
PCRE 8.44-GCCcore-10.3.0
PCRE2 10.36-GCCcore-10.3.0
Perl 5.32.1-GCCcore-10.3.0-minimal
Perl 5.32.1-GCCcore-10.3.0
PharmacoGx 2.4.0-foss-2021a
phenoptrReports 0.3.0-foss-2021a-R-4.1.0
Pillow 8.2.0-GCCcore-10.3.0
pixman 0.40.0-GCCcore-10.3.0
pkg-config 0.29.2-GCCcore-10.3.0
pkg-config 0.29.2
PMIx 3.2.3-GCCcore-10.3.0
PostgreSQL 13.3-GCCcore-10.3.0
pplacer 1.1.alpha19
prodigal 2.6.3-GCCcore-10.3.0
PROJ 8.0.1-GCCcore-10.3.0
pybind11 2.6.2-GCCcore-10.3.0
Pysam 0.16.0.1-GCC-10.3.0
Python 3.9.5-GCCcore-10.3.0-bare
Python 3.9.5-GCCcore-10.3.0
python-isal 0.11.0-GCCcore-10.3.0
Qhull 2020.2-GCCcore-10.3.0
R 4.1.0-foss-2021a
R-bundle-Bioconductor 3.13-foss-2021a-R-4.1.0
rcdk 3.6.0-foss-2021a
rgdal 1.5-23-foss-2021a-R-4.1.0
RStudio-Server 1.4.1717-foss-2021a-Java-11-R-4.1.0
Rust 1.52.1-GCCcore-10.3.0
ScaLAPACK 2.1.0-gompi-2021a-fb
SciPy-bundle 2021.05-foss-2021a
shinycssloaders 1.0.0-foss-2021a
SNFtool 2.3.1-foss-2021a
SOCI 4.0.2-GCC-10.3.0
SQLite 3.35.4-GCCcore-10.3.0
survcomp 1.42.0-foss-2021a
Szip 2.1.1-GCCcore-10.3.0
Tcl 8.6.11-GCCcore-10.3.0
Tk 8.6.11-GCCcore-10.3.0
Tkinter 3.9.5-GCCcore-10.3.0
UDUNITS 2.2.28-GCCcore-10.3.0
UnZip 6.0-GCCcore-10.3.0
util-linux 2.36-GCCcore-10.3.0
VCFtools 0.1.16-GCC-10.3.0
X11 20210518-GCCcore-10.3.0
xorg-macros 1.19.3-GCCcore-10.3.0
Xvfb 1.20.11-GCCcore-10.3.0
XZ 5.2.5-GCCcore-10.3.0
zlib 1.2.11-GCCcore-10.3.0
zlib 1.2.11
zstd 1.4.9-GCCcore-10.3.0