CIRI-full 2.0-foss-2018b-Perl-5.28.0-Java-1.8

Deprecated: Use of this version of CIRI-full is deprecated. More information on our Applications Support and Retention Policy.

CIRI-full is an accurate, high-throughput approach that uses both BSJ and reverse overlap (RO) features to reconstruct and quantify full-length circular RNAs from RNA-seq data sets.

Accessing CIRI-full 2.0-foss-2018b-Perl-5.28.0-Java-1.8

To load the module for CIRI-full 2.0-foss-2018b-Perl-5.28.0-Java-1.8 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load CIRI-full/2.0-foss-2018b-Perl-5.28.0-Java-1.8

BEAR Apps Version

2018b

Architectures

EL8-cascadelakeEL8-haswellUbuntu20.04-haswell

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

More Information

For more information visit the CIRI-full website.

Dependencies

This version of CIRI-full has a direct dependency on: foss/2018b Java/1.8 Perl/5.28.0-GCCcore-7.3.0

Last modified on 3rd June 2019