Installed Applications

Applications available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs).

Application Current Version BEAR Apps Version
ABAQUS 2021-hotfix-2117 2020b
ABSOLUTE 1.0.6-foss-2020b-R-4.0.3 2020b
acl 2.2.53-GCCcore-8.3.0 2019b
adjustText 0.7.3-foss-2021b 2021b
AdmixTools 7.0.2-foss-2020a-R-4.0.0-Perl-5.30.2 2020a
aenet 2.0.4-foss-2019b-mpi 2019b
AFNI 18.3.00-foss-2019a-Python-3.7.2 2019a
AfterQC 0.9.7-foss-2020b-Python-2.7.18 2020b
aicsimageio 4.9.4-foss-2021b 2021b
aiohttp 3.8.3-GCCcore-11.3.0 2022a
ald 1.2-foss-2020a-R-4.0.0 2020a
ALFA 1.1.1-foss-2019a-Python-3.7.2 2019a
almosthere 1.0.10-GCCcore-8.3.0 2019b
AlphaFold 2.2.2-foss-2021a-CUDA-11.3.1 2021a
AlphaPulldown 0.21.6-foss-2021a-CUDA-11.3.1 2021a
alsa-lib 1.2.7.2 2021b
Amber 20.13-AmberTools-21.12-foss-2020a-Python-3.8.2 2020a
Amber 20.13-AmberTools-21.12-fosscuda-2020a-Python-3.8.2 2020a
angsd 0.933-GCC-9.3.0 2020a
anno 1.0-foss-2019a 2019a
ANSYS 2023R1 2022a
ANSYSEM 2021R2-GCCcore-10.2.0 2020b
ant 1.10.12-Java-11 2022a
ANTLR 2.7.7-GCCcore-9.3.0-Java-11 2020a
ANTs 2.3.4-foss-2019b-Python-3.7.4 2019b
any2fasta 0.4.2-GCCcore-8.3.0 2019b
apcluster 1.4.8-foss-2021a 2021a
APR 1.7.0-GCCcore-10.3.0 2021a
APR-util 1.6.1-GCCcore-10.3.0 2021a
archive 1.1.2-foss-2020b-R-4.0.3 2020b
archspec 0.1.3-GCCcore-11.2.0 2021b
Armadillo 10.7.4-foss-2021a 2021a
arpack-ng 3.8.0-foss-2022a 2022a
Arrow 8.0.0-foss-2022a 2022a
arrow-R 6.0.0.2-foss-2021b-R-4.2.0 2021b
ArviZ 0.11.4-foss-2021b 2021b
ASE 3.22.0-foss-2021a 2021a
Aspera-CLI 3.9.6.1467.159c5b1 2020b
assimp 5.0.1-GCCcore-8.3.0 2019b
astropy 5.0.4-foss-2021b 2021b
ATAT 3_36-iomklc-2020b 2020b
ATK 2.38.0-GCCcore-11.3.0 2022a
at-spi2-atk 2.38.0-GCCcore-11.3.0 2022a
at-spi2-core 2.44.1-GCCcore-11.3.0 2022a
attr 2.4.48-GCCcore-9.3.0 2020a
attrdict3 2.0.2-GCCcore-11.2.0 2021b
AUCell 1.8.0-foss-2019b-R-3.6.2 2019b
AugmentedAutoencoder 0c8100f-fosscuda-2019b-Python-3.7.4 2019b
AUGUSTUS 3.3.3-foss-2019b 2019b
Autoconf 2.71-GCCcore-11.3.0 2022a
AutoDock 4.2.6-GCC-8.3.0 2019b
AutoDock_Vina 1.1.2_linux_x86 2019b
autograd 1.5-foss-2021b 2021b
Automake 1.16.5-GCCcore-11.3.0 2022a
Autotools 20220317-GCCcore-11.3.0 2022a
awscli 2.9.4-foss-2021b 2021b
BamTools 2.5.2-GCC-11.2.0 2021b
Barracuda_Virtual_Reactor 22.1.1-GCCcore-11.3.0 2022a
barrnap 0.9-gompi-2021b 2021b
basemap 1.2.2-foss-2020b 2020b
BaseSpaceSequenceHubCLI 1.0.0 2019a
BAT 2.9.2-foss-2021b-R-4.2.0 2021b
BatVI 1.02-foss-2019a 2019a
Bazel 5.1.1-GCCcore-11.3.0 2022a
BBMap 38.90-GCC-10.2.0 2020b
bcbio-gff 0.6.9-foss-2021b 2021b
BCFtools 1.10.2-GCC-9.3.0 2020a
bcl2fastq2 2.20.0-GCC-9.3.0 2020a
bcl-convert 4.0.3-2el7.x86_64 2022a
Beagle 5.1-25Nov19.28d-Java-11 2019b
beagle-lib 3.1.2-GCC-9.3.0 2020a
BEAR-Python-DataScience 2020a-foss-2020a-Python-3.8.2 2020a
BEAR-Python-MSc-Bioinformatics 2021b-foss-2021b 2021b
BEAR-Python-Sciences 2019b-foss-2019b-Python-3.7.4 2019b
BEAR-R-bio 2021b-foss-2021b-R-4.2.0 2021b
BEAR-R-economics 2020a-foss-2020a-R-4.0.0 2020a
BEAR-R-geo 2019b-foss-2019b-R-3.6.2 2019b
BeautifulSoup 4.10.0-GCCcore-11.3.0 2022a
BEDOPS 2.4.41-foss-2021b 2021b
BEDTools 2.30.0-GCC-11.2.0 2021b
betapart 1.5.6-foss-2021b-R-4.2.0 2021b
BGEN 1.1.6-GCCcore-8.3.0 2019b
bibtexparser 1.4.0-GCCcore-10.3.0 2021a
bigsnpr 1.8.1-foss-2020a-R-4.0.0 2020a
binutils 2.38 2022a
Bio-DB-BigFile 1.07-foss-2019b-Perl-5.30.0 2019b
Bio-DB-BigFile-jksrc v375-foss-2019a 2019a
Bio-DB-HTS 3.01-GCCcore-8.3.0-Perl-5.30.0 2019b
biofluff 3.0.3-foss-2019b-Python-3.7.4 2019b
BiomasaFP 0.3-foss-2020b-R-4.0.3 2020b
BIOMASS 2.1.8-foss-2021b-R-4.2.0 2021b
biom-format 2.1.12-foss-2021b 2021b
BioPerl 1.7.8-GCCcore-11.2.0 2021b
Biopython 1.79-foss-2021b 2021b
Bio-SearchIO-hmmer 1.7.3-GCC-11.2.0 2021b
BioServices 1.10.1-foss-2021b 2021b
Bisbee 20210108-foss-2021b-R-4.2.0 2021b
Bismark 0.22.3-foss-2019b 2019b
Bison 3.8.2 2021b
Bison 3.8.2 2022a
BLAST+ 2.12.0-gompi-2021b 2021b
BLAT 3.5-GCCcore-8.3.0 2019b
Blender 3.4.1-linux-x86_64-CUDA-11.7.0 2022a
BLIS 0.9.0-GCC-11.3.0 2022a
Blitz++ 1.0.2-GCCcore-9.3.0 2020a
blockCV 2.1.4-foss-2021a-R-4.1.0 2021a
Blosc 1.21.3-GCCcore-11.3.0 2022a
Blosc2 2.6.1-GCCcore-11.3.0 2022a
BMDExpress2 2.30.0502 2020b
BNC 2.12.18-GCCcore-10.2.0 2020b
bokeh 2.4.3-foss-2022a 2022a
Boost 1.55.0 2020b
Boost.Python 1.76.0-foss-2021a-numpy 2021a
boto3 1.20.13-GCCcore-11.2.0 2021b
Bowtie 1.2.3-GCC-8.3.0 2019b
Bowtie2 2.4.4-GCC-10.3.0 2021a
Bracken 2.6.0-foss-2019b-Python-3.7.4 2019b
BRHCLUS 4.7.2-foss-2021a 2021a
Brotli 1.0.9-GCCcore-11.3.0 2022a
BuDDy 2.4-GCCcore-10.2.0 2020b
Bullet 2.88-foss-2019a-Python-3.7.2 2019a
BUSCO 4.0.5-foss-2019b-Python-3.7.4 2019b
BWA 0.7.17-GCCcore-11.2.0 2021b
bwa-mem2-meth 0.2.2-GCC-10.2.0 2020b
bx-python 0.8.13-foss-2021b 2021b
bzip2 1.0.6 2020b
C3D 1.0.0 2019a
CAGEr 1.34.0-foss-2021a-R-4.1.0 2021a
cairo 1.17.4-GCCcore-11.3.0 2022a
canopus_treemap 0.0.1-foss-2021b 2021b
Cantera 2.5.1-MATLAB-2021b 2020b
canu 1.9-GCCcore-8.3.0-Perl-5.30.0 2019b
Canvas 1.40.0.1613 2020a
CapnProto 0.9.1-GCCcore-10.3.0 2021a
Cardinal 2.6.0-foss-2020a-R-4.0.0 2020a
c-ares 1.18.1-GCCcore-11.2.0 2021b
Cartopy 0.20.3-foss-2021b 2021b
CASTEP 22.11-foss-2021b 2021b
CATALYST 1.10.3-foss-2019b-R-3.6.2 2019b
cba 0.2-21-foss-2019b-R-3.6.2 2019b
ccache 4.6.1-GCCcore-11.2.0 2021b
CCL 1.12.1-GCCcore-10.3.0 2021a
CD-HIT 4.8.1-GCC-11.2.0 2021b
CDO 1.9.10-iomkl-2020a 2020a
cdsapi 0.2.7-foss-2019b-Python-3.7.4 2019b
cell2location 0.1.3-foss-2022a 2022a
cellassign 520de59-foss-2019b-Python-3.7.4-R-3.6.2 2019b
CellBender 0.2.0-foss-2021a-CUDA-11.3.1 2021a
CellChat 20210814-foss-2020a-R-4.0.0 2020a
celldex 1.6.0-foss-2021b-R-4.2.0 2021b
cellphonedb 2.1.1-foss-2019b-Python-3.7.4-R-3.6.2 2019b
CellPhoneDB 3.1.0-foss-2020b 2020b
Cellpose 2.2-foss-2022a 2022a
CellRanger 7.0.0 2021a
CellRanger-ARC 1.0.1 2020a
CellRanger-ATAC 2.0.0 2020a
CellRank 1.5.1-foss-2021a 2021a
Centrifuge 1.0.4-gompi-2020b 2020b
ceres-solver 1.14.0-foss-2019b 2019b
CESM 2.1.3-foss-2021a 2021a
CFITSIO 3.49-GCCcore-10.2.0-threads 2020b
cf-plot 3.0.6-foss-2019b-Python-3.7.4 2019b
cf-python 3.4.0-foss-2019b-Python-3.7.4 2019b
cftime 1.0.3.4-foss-2019a-Python-2.7.15 2019a
CGAL 4.14.3-gompi-2021b 2021b
cgat 0.6.5-foss-2021a 2021a
ChAMP 2.18.3-foss-2020a-R-4.0.0 2020a
CharLS 2.3.4-GCCcore-10.3.0 2021a
Check 0.15.2-GCCcore-10.2.0 2020b
CheckM 1.1.3-foss-2021a 2021a
ChimeraX 1.5-linux-x86_64 2021b
ChIPseeker 1.28.3-foss-2021a-R-4.1.0 2021a
CIRI-long 1.1.0-foss-2021b 2021b
Clairvoyante 1.02-foss-2019a-Python-3.7.2 2019a
Clang 13.0.1-GCCcore-11.3.0 2022a
CLHEP 2.4.4.0-GCC-9.3.0 2020a
clingo 5.4.0-GCCcore-8.3.0-Python-3.7.4 2019b
CloudCompare 2.12.0-foss-2021a 2021a
clust 1.12.0-foss-2020a-Python-3.8.2 2020a
ClustalW2 2.1-foss-2019b 2019b
clusterProfiler 4.4.4-foss-2021b-R-4.2.0 2021b
ClusterR 1.2.1-foss-2019b-R-3.6.2 2019b
clustrd 1.3.7-foss-2019b-R-3.6.2 2019b
cma 3.2.2-foss-2021b 2021b
CMake 3.24.3-GCCcore-11.3.0 2022a
CMSeq 1.0.4-foss-2021b 2021b
cnpy 20180601-foss-2021a 2021a
CNVkit 0.9.8-foss-2020a-Python-3.8.2-R-4.0.0 2020a
CNVnator 0.4.1-foss-2019b-Python-3.7.4 2019b
code-server 3.9.3 2020a
CODEX2 20191031-foss-2019a-R-3.6.0 2019a
CodingQuarry 2.0-GCC-8.3.0 2019b
coexist 0.2.2-foss-2021a 2021a
colorRamps 2.3-foss-2019b-R-3.6.2 2019b
commonmark 0.9.1-GCCcore-8.3.0-Python-3.7.4 2019b
Compass 20220402-foss-2020b 2020b
COMSOL 5.6.0.280 2020a
ConcurrentQueue 1.0.3-GCCcore-11.2.0 2021b
ConnectomeWorkbench 1.5.0-GCCcore-10.3.0 2021a
conumee 1.18.0-foss-2019a-R-3.6.0 2019a
Coreutils 8.32-GCCcore-8.3.0 2019b
corner 2.2.1-foss-2021b 2021b
CP2K 2023.1-foss-2021b-CUDA-11.4.1 2021b
cpl 7.1.4-foss-2020b 2020b
CPLEX 20.10-GCCcore-10.2.0 2020b
CppUnit 1.12.1-GCCcore-8.2.0 2019a
cppy 1.2.1-GCCcore-11.3.0 2022a
cryoDRGN 0.3.5-fosscuda-2020b 2020b
CRYSTAL 23-iomkl-2021b 2021b
CSBDeep 0.4.1-foss-2019a-Python-3.7.2 2019a
CSTools 3.1.0-foss-2019b-R-3.6.2 2019b
CST-Studio-Suite 2022.SP4-GCCcore-10.3.0-Java-11 2021a
ctffind 4.1.14-foss-2021a 2021a
CTPL 0.0.2-GCC-10.3.0 2021a
cub 1.11.0-foss-2021a-CUDA-11.3.1 2021a
cuCIM 23.2.0-foss-2021b-CUDA-11.4.1 2021b
CUDA 11.7.0 2022a
CUDAcore 11.1.1 2020b
cuDNN 8.4.1.50-CUDA-11.7.0 2022a
CUnit 2.1-3-GCCcore-11.2.0 2021b
CuPy 11.4.0-foss-2021b-CUDA-11.4.1 2021b
cURL 7.83.0-GCCcore-11.3.0 2022a
Curves+ 2015-foss-2019a 2019a
cutadapt 4.1-GCCcore-11.2.0 2021b
cuTENSOR 1.6.1.5-CUDA-11.4.1 2021b
cyCombine 0.2.15-foss-2021b-R-4.2.0 2021b
Cython 0.27.3-GCCcore-9.3.0-Python-2.7.18 2020a
czifile 2019.7.2-foss-2021b 2021b
dask 2022.10.0-foss-2022a 2022a
DataCombine 0.2.21-foss-2021a-R-4.1.0 2021a
dateutils 0.4.7-GCCcore-8.3.0 2019b
DB 18.1.40-GCCcore-11.3.0 2022a
DBD-mysql 4.050-foss-2019b-Perl-5.30.0 2019b
DB_File 1.857-GCCcore-11.2.0 2021b
dbscan 1.1-8-foss-2020a-R-4.0.0 2020a
DBus 1.14.0-GCCcore-11.3.0 2022a
dbus-glib 0.112-GCCcore-11.2.0 2021b
DCC 0.5.0-foss-2021b 2021b
dcm2niix 1.0.20220720-GCCcore-10.3.0 2021a
deal.II 9.4.0-foss-2021a 2021a
deal.II 9.4.0-iomkl-2021a 2021a
DECODE 0.10.0-fosscuda-2020b 2020b
Deepbinner c261ae9-foss-2019b-Python-3.7.4 2019b
DeepCell 0.11.1-foss-2021b-CUDA-11.4.1 2021b
deepdiff 5.8.1-GCCcore-11.3.0 2022a
DeepMod 0.1.1-foss-2019a-Python-3.7.2 2019a
deepTools 3.5.0-foss-2020a-Python-3.8.2 2020a
demultiplex 1.2.2-foss-2021a 2021a
DendroPy 4.5.2-GCCcore-11.2.0 2021b
deSALT 1.5-foss-2019a 2019a
destiny 2.14.0-foss-2019a-R-3.6.0 2019a
detectron2 0.1.2-fosscuda-2019b-Python-3.7.4 2019b
DIAMOND 2.0.13-GCC-11.2.0 2021b
DiffBind 2.14.0-foss-2019b-R-3.6.2 2019b
dill 0.3.6-GCCcore-11.3.0 2022a
diplib 3.3.0-foss-2021a 2021a
DirichletMultinomial 1.32.0-foss-2020a-R-4.0.0 2020a
DivNet 31e04e2-foss-2020a-R-4.0.0 2020a
DL_MESO 2.7-foss-2020a 2020a
DL_POLY 4.10.0-foss-2020a 2020a
dm-tree 0.1.8-GCCcore-11.3.0 2022a
docstring 1.0.0-foss-2021a 2021a
DosageConvertor 6761a8b-foss-2019a 2019a
dotNET-SDK 3.1.424-linux-x64 2021b
double-conversion 3.2.0-GCCcore-11.3.0 2022a
DoubletFinder 20200901-foss-2019b-R-3.6.2 2019b
Doxygen 1.9.1-GCCcore-11.2.0 2021b
DPClust 2.2.8-foss-2019a-R-3.6.0 2019a
dplyr 1.0.6-foss-2020b-R-4.0.3 2020b
DRAM 1.3.6-foss-2021b 2021b
DROP 1.0.3-foss-2020a-Python-3.8.2-R-4.0.0 2020a
dropEst 0.8.6-foss-2019b-R-3.6.2 2019b
dtcmp 1.1.0-gompi-2020a 2020a
DualSPHysics 5.0.175-foss-2021a-CUDA-11.3.1 2021a
Dynare 4.6.3-foss-2019b 2019b
ecc_finder 1.0.0_20221007_67d06f3-foss-2021b 2021b
ecCodes 2.20.0-gompi-2020b 2020b
eccodes-python 1.2.0-foss-2020a-Python-3.8.2 2020a
edlib 1.3.9-GCC-11.2.0 2021b
eggnog-mapper 1.0.3-foss-2019b-Python-2.7.16 2019b
Eigen 3.4.0-GCCcore-11.3.0 2022a
EIGENSOFT 7.2.1-foss-2020a 2020a
elastool 7199f7a-iomkl-2019b-Python-3.7.4-VASP-5.4.4 2019b
elfutils 0.187-GCCcore-11.3.0 2022a
Elmer-FEM 9.0-foss-2020b 2020b
ELMoForManyLangs 0.0.2-foss-2019a-Python-3.7.2 2019a
ELPA 2021.05.001-foss-2021b 2021b
embarcadero 1.2.0.1003-foss-2021b-R-4.2.0 2021b
emcee 3.1.3-foss-2021b 2021b
enchant-2 2.3.3-GCCcore-11.2.0 2021b
EnhancedVolcano 20211028-foss-2021a-R-4.1.0 2021a
EPACTS 3.3.2-foss-2021a 2021a
erfa 20210727-GCCcore-10.2.0 2020b
ESMF 8.1.1-foss-2021a 2021a
ESMPy 8.0.1-foss-2020b 2020b
esoreflex 2.11.5-foss-2020b 2020b
esorex 3.13.5-foss-2020b 2020b
espdr 2.3.3-foss-2020b 2020b
ETE 3.1.2-foss-2021a 2021a
EVidenceModeler 1.1.1-GCCcore-8.3.0 2019b
exiv2 0.27.5-GCCcore-11.2.0 2021b
Exonerate 2.4.0-GCC-8.3.0 2019b
expat 2.4.8-GCCcore-11.3.0 2022a
expecttest 0.1.3-GCCcore-11.3.0 2022a
eXpress 1.5.3-foss-2019b 2019b
faahKO 1.36.0-foss-2021b-R-4.2.0 2021b
factoextra 1.0.7-foss-2020a-R-4.0.0 2020a
FASTA 36.3.8h_04-May-2020-foss-2019b 2019b
FastANI 1.33-GCC-10.3.0 2021a
fasterize 1.0.2-foss-2019b-R-3.6.2 2019b
FastME 2.1.6.4-GCC-11.2.0 2021b
fastp 0.23.2-GCC-11.2.0 2021b
FastPG 0.0.8-foss-2021b-R-4.2.0 2021b
FastQC 0.11.9-Java-11 2019b
fastq-join 1.3.1-GCCcore-10.2.0 2020b
FastQ_Screen 0.14.1-foss-2019b-Perl-5.30.0 2019b
FastQTL 2.184_gtex-47180b9-foss-2019b-Python-3.7.4-R-3.6.2 2019b
fastStructure 1.0-foss-2020a-Python-2.7.18 2020a
FastTree 2.1.11-GCCcore-11.2.0 2021b
FASTX-Toolkit 0.0.14-GCCcore-8.3.0 2019b
FD 1.0-12-foss-2019b-R-3.6.2 2019b
FFmpeg 4.4.2-GCCcore-11.3.0 2022a
FFTW 3.3.10-NVHPC-22.7-CUDA-11.7.0 2022a
FFTW.MPI 3.3.10-nvompi-2022.07 2022a
fgbio 2.0.2 2021a
fgeo 1.1.4-foss-2020b-R-4.0.3 2020b
Fiji 20201104-1356 2020b
file 5.39-GCCcore-10.2.0 2020b
fineSTRUCTURE 4.1.1-foss-2019b 2019b
Fiona 1.8.21-foss-2021b 2021b
FIX 1.06.15-foss-2021a 2021a
FLAC 1.3.3-GCCcore-11.2.0 2021b
FLANN 1.9.2-foss-2021a 2021a
flappie 2.0.0-foss-2019a-Python-3.7.2 2019a
FLASH 1.2.11-GCC-8.3.0 2019b
flashpca 20200910-foss-2019b 2019b
Flask 1.1.4-GCCcore-10.3.0 2021a
flatbuffers 2.0.7-GCCcore-11.3.0 2022a
flatbuffers-python 2.0-GCCcore-11.3.0 2022a
flex 2.6.4-GCCcore-11.3.0 2022a
FlexiBLAS 3.2.0-NVHPC-22.7-CUDA-11.7.0 2022a
flowVS 1.28.0-foss-2021b-R-4.2.0 2021b
FLTK 1.3.6-GCCcore-10.3.0 2021a
Flye 2.6-foss-2019b-Python-3.7.4 2019b
fmi2 0.2.0-foss-2020a-R-4.0.0 2020a
FMRIprep 20.2.0-foss-2019a-Python-3.7.2 2019a
fontconfig 2.14.0-GCCcore-11.3.0 2022a
footBayes 20211103-foss-2021a-R-4.1.0 2021a
Forge 19.1.4 2019a
foss 2022a 2022a
fosscuda 2020b 2020b
freeglut 3.2.1-GCCcore-11.2.0 2021b
FreeImage 3.18.0-GCCcore-10.3.0 2021a
freesurfer 1.6.8-foss-2021a-R-4.1.0 2021a
FreeSurfer 7.2.0-centos8_x86_64 2021a
FreeTDS 1.3.3-GCCcore-10.3.0 2021a
freetype 2.12.1-GCCcore-11.3.0 2022a
FreeXL 1.0.6-GCCcore-11.2.0 2021b
FriBidi 1.0.12-GCCcore-11.3.0 2022a
FSL 6.0.5.1-foss-2021a-fslpython 2021a
FSLeyes 1.3.3-foss-2021a 2021a
fslr 2.24.1-foss-2021a-R-4.1.0 2021a
FTGL 2.1.3-rc5-GCCcore-8.2.0 2019a
funannotate 1.8.1-foss-2019b-Python-3.7.4 2019b
furrr 0.2.1-foss-2020a-R-4.0.0 2020a
fuzzySim 4.9.2-foss-2021b-R-4.2.0 2021b
fuzzywuzzy 0.18.0-foss-2019b-Python-3.7.4 2019b
fv 5.5.2-foss-2020b 2020b
g2clib 1.6.3-GCCcore-10.2.0 2020b
g2lib 3.2.0-GCCcore-10.2.0 2020b
gambin 2.4.4-foss-2020a-R-4.0.0 2020a
GAMESS-US 20190930-R2-foss-2019b 2019b
gasgano 2.4.8-foss-2020b 2020b
GATE 9.1-foss-2020a-Python-3.8.2 2020a
GATK 4.2.0.0-GCCcore-10.2.0-Java-11 2020b
GATK 4.2.0.0-GCCcore-10.2.0-Java-1.8 2020b
Gaussian 09 2019b
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GRASS 8.2.0-foss-2021b 2021b
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groff 1.22.4-GCCcore-11.3.0 2022a
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Groovy 4.0.3-Java-11 2021b
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GTDB-Tk 2.0.0-foss-2021a 2021a
gtex-pipeline gtex_v8-foss-2019b-Python-3.7.4-R-3.6.2 2019b
GTK+ 3.24.23-GCCcore-10.2.0 2020b
GTK2 2.24.33-GCCcore-11.3.0 2022a
GTK3 3.24.31-GCCcore-11.2.0 2021b
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GTS 0.7.6-GCCcore-11.2.0 2021b
Guile 3.0.7-GCCcore-11.2.0 2021b
Gurobi 9.0.0 2019b
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gzip 1.12-GCCcore-11.3.0 2022a
h5py 3.7.0-foss-2022a 2022a
Hadoop 2.10.0-GCCcore-8.3.0-native 2019b
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HarfBuzz 4.2.1-GCCcore-11.3.0 2022a
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harmony 1.0.0-20201009-foss-2020b-R-4.0.3 2020b
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HDF 4.2.15-GCCcore-11.2.0 2021b
HDF5 1.13.1-gompi-2022a 2022a
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HDF-EOS 2.20-GCCcore-10.2.0 2020b
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help2man 1.49.2-GCCcore-11.3.0 2022a
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hypervolume 3.1.0-foss-2021b-R-4.2.0 2021b
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iccifort 2020.4.304 2020b
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imageio 2.22.2-foss-2022a 2022a
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ImageMagick 7.1.0-37-GCCcore-11.3.0 2022a
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intel 2022a 2022a
intel-compilers 2022.1.0 2022a
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intltool 0.51.0-GCCcore-11.3.0 2022a
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iomkl 2021b 2021b
iomklc 2020b 2020b
iompi 2021b 2021b
iompic 2020b 2020b
ipdb 0.13.9-GCCcore-10.2.0 2020b
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JAGS 4.3.0-foss-2021b 2021b
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jbigkit 2.1-GCCcore-11.3.0 2022a
Jellyfish 2.3.0-GCC-11.2.0 2021b
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Julia 1.8.2-linux-x86_64 2021b
JupyterLab 3.2.5-GCCcore-10.3.0 2021a
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kim-api 2.3.0-GCCcore-11.2.0 2021b
king 2.2.7-foss-2020b 2020b
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KNIME 4.2.1 2020h
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Kraken2 2.1.2-gompi-2021b 2021b
kseq 20221202 2021b
LAME 3.100-GCCcore-11.3.0 2022a
LAMMPS 23Jun2022-foss-2021b-kokkos 2021b
landscapemetrics 1.3-foss-2019a-R-3.6.0 2019a
LDC 1.26.0-GCCcore-10.3.0 2021a
leafcutter 0.2.9-foss-2020a-R-4.0.0-Python-2.7.18 2020a
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leidenalg 0.9.1-foss-2022a 2022a
Leptonica 1.83.0-GCCcore-11.3.0 2022a
lftp 4.9.2-GCCcore-11.2.0 2021b
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libarchive 3.6.1-GCCcore-11.3.0 2022a
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libjpeg-turbo 2.1.3-GCCcore-11.3.0 2022a
libmatheval 1.1.11-GCCcore-9.3.0 2020a
libogg 1.3.5-GCCcore-11.2.0 2021b
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libpng 1.2.59 2020a
libpng 1.2.59 2021a
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librttopo 1.1.0-GCC-11.2.0 2021b
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libsndfile 1.0.31-GCCcore-11.2.0 2021b
libsodium 1.0.18-GCCcore-11.3.0 2022a
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libspatialite 5.0.1-GCC-11.2.0 2021b
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libtecla 1.6.3-GCCcore-10.2.0 2020b
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libtirpc 1.3.2-GCCcore-11.2.0 2021b
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libunwind 1.6.2-GCCcore-11.3.0 2022a
liburing 2.3-GCCcore-11.2.0 2021b
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libvorbis 1.3.7-GCCcore-11.2.0 2021b
libwebp 1.2.4-GCCcore-11.3.0 2022a
libwpe 1.13.3-GCCcore-11.2.0 2021b
libxc 5.1.6-GCC-11.2.0 2021b
libxml++ 2.40.1-GCCcore-10.3.0 2021a
libxml2 2.9.13-GCCcore-11.3.0 2022a
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libxsmm 1.17-GCC-11.2.0 2021b
libyaml 0.2.5-GCCcore-11.3.0 2022a
libzip 1.7.3-GCCcore-11.2.0 2021b
lifelines 0.26.3-fosscuda-2020b 2020b
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LIGGGHTS 3.8.0-foss-2020a 2020a
Lighter 1.1.2-foss-2019b 2019b
lightkurve 2.3.0-foss-2021b 2021b
limix-bgen 3.0.3-GCCcore-8.3.0 2019b
LittleCMS 2.13.1-GCCcore-11.3.0 2022a
LLVM 12.0.1-GCCcore-11.3.0 2022a
LMDB 0.9.29-GCCcore-11.3.0 2022a
lobSTR 4.0.6-foss-2019a 2019a
LoFreq 2.1.5-foss-2020a-Python-2.7.18 2020a
log4r 0.4.2-foss-2021a 2021a
LongQC 1.0-foss-2019b-Python-3.7.4 2019b
Longshot 0.4.1-GCCcore-8.3.0 2019b
loompy 3.0.7-foss-2021a 2021a
LSD2 2.3-GCCcore-11.2.0 2021b
LS-DYNA 11.2.2-iccifort-2020.4.304 2020b
Lua 5.4.3-GCCcore-11.2.0 2021b
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lxml 4.9.1-GCCcore-11.3.0 2022a
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M4 1.4.19 2021b
M4 1.4.19 2022a
MACS2 2.2.7.1-foss-2020a-Python-3.8.2 2020a
MAFFT 7.490-gompi-2021b-with-extensions 2021b
maftools 2.12.0-foss-2021b-R-4.2.0 2021b
MAGeCK 0.5.9.4-foss-2021a 2021a
magma 2.6.2-foss-2022a-CUDA-11.7.0 2022a
MAJIQ 2.2-foss-2020a-54fd98d-Python-3.8.2 2020a
make 4.3-GCCcore-10.3.0 2021a
makedepend 1.0.6-GCCcore-10.2.0 2020b
makeinfo 6.7-GCCcore-10.3.0-minimal 2021a
Mako 1.2.0-GCCcore-11.3.0 2022a
MALLET 202108 2020b
mappy 2.17-foss-2019b-Python-3.7.4 2019b
marginPhase cdf139e-foss-2019a 2019a
MariaDB 10.5.5-gompi-2020a 2020a
MariaDB-connector-c 3.1.7-GCCcore-9.3.0 2020a
Mash 2.3-GCC-10.3.0 2021a
MashMap 20210721-foss-2020b 2020b
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mass2adduct 20210609-foss-2020a-R-4.0.0 2020a
MAST 1.14.0-foss-2020a-R-4.0.0 2020a
MATIO 1.5.21-GCCcore-10.3.0 2021a
MATLAB 2022a 2021a
MATLAB 2022a 2021b
matplotlib 3.5.2-foss-2022a 2022a
Maude 3.1-GCCcore-10.2.0 2020b
Maven 3.6.3 2019b
Maven 3.6.3 2021a
Maven 3.6.3 2021b
mayavi 4.7.1-foss-2019b-Python-3.7.4 2019b
mcclust 1.0-foss-2020a-R-4.0.0 2020a
MCL 14.137-GCCcore-11.2.0 2021b
MCR R2021a.3 2021a
mddnmr 2.7-foss-2020a-Python-2.7.18 2020a
mechanize 0.4.7-GCCcore-10.2.0 2020b
MedPy 0.4.0-foss-2019b-Python-3.7.4 2019b
Meep 1.25.0-foss-2021b 2021b
MEGAHIT 1.2.8-GCCcore-8.3.0 2019b
Megalodon 2.4.2-foss-2021a 2021a
MEGAN_Calc_Code 3.1-foss-2019b 2019b
MEGAN_Preprocessor 3.1-foss-2019b 2019b
memory-profiler 0.55.0-foss-2019a 2019a
Mercurial 5.7.1-GCCcore-10.2.0 2020b
MERLIN 1.1.2-GCCcore-9.3.0 2020a
Mesa 22.0.3-GCCcore-11.3.0 2022a
MESMER 6.1-foss-2021a 2021a
Meson 0.62.1-GCCcore-11.3.0 2022a
Mesquite 2.3.0-GCCcore-8.3.0 2019b
META 1.7 2019a
MetaboLabPy 0.8.4-foss-2021b 2021b
Metal 2011-03-25-foss-2019b 2019b
MetaPhlAn 3.0.14-foss-2021b 2021b
MetaXcan 0.7.3-foss-2019b-Python-3.7.4 2019b
methylartist 1.2.6-foss-2021b 2021b
METIS 5.1.0-GCCcore-11.2.0 2021b
MICRESS 7.003 2020a
microbenchmark 1.4.9-foss-2020a-R-4.0.0 2020a
Micro-Manager 1.4.24-foss-2021b 2021b
Miniconda3 22.11.1-1 2022a
Minimac3 2.0.1-foss-2019a 2019a
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minimap2 2.24-GCCcore-11.2.0 2021b
minizip 1.1-GCCcore-11.2.0 2021b
miREvo f2abc2a-GCCcore-8.3.0-Perl-5.30.0 2019b
MIRTK 20210104-foss-2020a-Python-3.8.2 2020a
mitre 1.0b1-foss-2019b-Python-2.7.16 2019b
mlpy 3.5.0-foss-2019b-Python-2.7.16 2019b
mlst 2.19.0-foss-2019b 2019b
mlxtend 0.19.0-foss-2021b 2021b
MMseqs2 13-45111-gompi-2021b 2021b
MMSplice 1.0.3-foss-2019a-Python-3.7.2 2019a
MNE-Python 1.3.1-foss-2022a 2022a
modbam2bed 0.7.0-GCC-11.3.0 2022a
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scVelo 0.2.4-foss-2021a 2021a
scvi-tools 0.20.1-foss-2022a 2022a
SDL2 2.0.20-GCCcore-11.2.0 2021b
Seaborn 0.12.1-foss-2022a 2022a
segemehl 0.3.4-GCC-9.3.0 2020a
SEPP 4.5.1-foss-2021b 2021b
seqtk 1.3-GCC-11.2.0 2021b
sequenza 3.0.0-foss-2021b-MSc 2021b
sequenza-utils 3.0.0-foss-2021b-MSc 2021b
Serf 1.3.9-GCCcore-10.3.0 2021a
Seurat 4.0.4-foss-2020b-R-4.0.3 2020b
SeuratDisk 0.0.0.9018-foss-2020a-R-4.0.0 2020a
SeuratWrappers 20210730-foss-2020b-R-4.0.3 2020b
sf 1.0-0-foss-2020b-R-4.0.3 2020b
SHAP 0.41.0-foss-2022a 2022a
SHAPEIT 2.r904.glibcv2.17 2019b
SHAPEIT4 4.2.1-foss-2020b 2020b
Shapely 1.8.2-foss-2021b 2021b
shinycssloaders 1.0.0-foss-2021a 2021a
shovill 1.1.0-foss-2019b-Python-3.7.4 2019b
shrinkwrap 1.0.0-beta-GCCcore-8.2.0 2019a
SICER2 1.0.3-foss-2020a-Python-3.8.2 2020a
Signac 1.3.0-foss-2020b-R-4.0.3 2020b
SignalP 5.0b 2019b
SigProfilerMatrixGenerator 1.1.7-foss-2019b-Python-3.7.4 2019b
SigProfilerMatrixGeneratorR 1.1-foss-2019b-R-3.6.2-Python-3.7.4 2019b
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SimpleITK 1.2.4-foss-2019b-Python-3.7.4 2019b
sinfo 0.3.1-GCCcore-8.3.0-Python-3.7.4 2019b
SingCellaR 1.2.0-foss-2020b-R-4.0.3 2020b
singlecellmethods 6f3a00d-foss-2019b-R-3.6.2 2019b
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Singularity Information Page system
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sklearn-crfsuite 0.3.6-foss-2019b-Python-3.7.4 2019b
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SNAP 2013-11-29-GCC-8.3.0 2019b
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SNFtool 2.3.1-foss-2021a 2021a
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snpEff 5.0e-GCCcore-11.2.0-Java-11 2021b
SNPTEST 2.5.2 2019b
SOCI 4.0.3-GCC-11.2.0 2021b
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spektral 1.1.0-foss-2021b-CUDA-11.4.1 2021b
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splancs 2.01-42-foss-2021a 2021a
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SRA-Toolkit 2.10.9-gompi-2020b 2020b
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STAR 2.7.2b-GCC-8.3.0 2019b
STAR-CCM+ 18.02.008 2022a
Stata 17 2020a
statsmodels 0.13.1-foss-2022a 2022a
strelka 2.9.10-foss-2020b-Python-2.7.18 2020b
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talos 0.6.3-foss-2019a-Python-3.7.2 2019a
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Tamarin_prover 1.6.1-GCCcore-10.2.0 2020b
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tbl2asn 20220427-linux64 2021b
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tensorboardX 2.5.1-foss-2022a 2022a
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tesseract 5.3.0-GCCcore-11.3.0 2022a
texinfo 6.5-GCCcore-8.2.0 2019a
texlive 20200406-GCCcore-9.3.0 2020a
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Theano 1.1.2-fosscuda-2020b-PyMC 2020b
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TideHunter 1.5.4-GCC-11.2.0 2021b
tidymodels 0.1.0-foss-2020a-R-4.0.0 2020a
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tifffile 2019.7.26.2-foss-2019b-Python-3.7.4 2019b
TIGRAMITE 4.2.0.3-foss-2019b-Python-3.7.4 2019b
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timm 0.6.12-foss-2021a-PyTorch-1.10.0 2021a
TinyDB 3.15.2-GCCcore-8.3.0 2019b
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tmux 3.0a 2019b
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trimAl 1.4.1-GCCcore-11.2.0 2021b
trimesh 3.9.1-foss-2019b-Python-3.7.4 2019b
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Trimmomatic 0.39-Java-11 2021b
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utf8proc 2.7.0-GCCcore-11.3.0 2022a
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utm 0.5.0-foss-2019a-Python-2.7.15 2019a
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variant_tools 3.1.3-foss-2019b-Python-3.7.4 2019b
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visdom 0.1.8.9-fosscuda-2020b 2020b
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vt 2187ff6-foss-2019b 2019b
VTK 9.2.2-foss-2022a 2022a
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wcslib 7.6-GCCcore-10.2.0 2020b
WebKitGTK+ 2.37.1-GCC-11.2.0 2021b
WEKA 3.8.4-Java-11 2019b
WGCNA 1.70-3-foss-2020a-R-4.0.0 2020a
wget 1.21.2-GCCcore-11.2.0 2021b
wittgenstein 0.3.2-foss-2021b 2021b
wkhtmltopdf 0.12.6-1.centos8.x86_64 2020a
WML-CE 1.7.0 2019b
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WPS 4.2-foss-2020b-dmpar 2020b
WRF 4.2.2-foss-2020b-hydro 2020b
WRF-Hydro 5.1.1-foss-2020b 2020b
writexl 1.4.0-foss-2021a-R-4.1.0 2021a
wxPython 4.2.0-foss-2021b 2021b
wxWidgets 3.2.0-GCC-11.2.0 2021b
X11 20220504-GCCcore-11.3.0 2022a
x264 20220620-GCCcore-11.3.0 2022a
x265 3.5-GCCcore-11.3.0 2022a
xarray 0.20.1-foss-2021b 2021b
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xESMF 0.3.0-foss-2020b 2020b
xgboost 1.0.0.2-foss-2019b-R-3.6.2 2019b
XlsxWriter 3.0.2-GCCcore-11.2.0 2021b
Xmipp 3.22.07-Helios-foss-2021a-CUDA-11.3.1 2021a
XML-LibXML 2.0207-GCCcore-11.2.0 2021b
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xpa 2.1.20-foss-2020b 2020b
xprop 1.2.5-GCCcore-10.3.0 2021a
xproto 7.0.31-GCCcore-10.2.0 2020b
xterm 366-foss-2020a 2020a
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xxd 8.2.4220-GCCcore-11.2.0 2021b
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yacs 0.1.7-GCCcore-8.3.0 2019b
YACS 0.1.8-GCCcore-10.3.0 2021a
Yade 2022.01a-foss-2021a 2021a
yaff 1.6.0-iomkl-2019b-Python-3.7.4 2019b
yaml-cpp 0.6.3-GCCcore-8.3.0 2019b
Yasm 1.3.0-GCCcore-11.3.0 2022a
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Yices 2.6.2-GCCcore-10.2.0 2020b
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zarr 2.13.3-foss-2021b 2021b
ZeroMQ 4.3.4-GCCcore-11.3.0 2022a
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zlib 1.2.12-GCCcore-11.3.0 2022a
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