Installed Applications

Applications available on the BEAR systems (BlueBEAR and BEAR Cloud VMs).

Application Current Version BEAR Apps Version
4ti2 1.6.10-GCC-11.3.0 2022a
ABAQUS 2024-hotfix-2405 2022b
ABINIT 10.2.5-intel-2023a 2023a
ABRicate 1.0.0-gompi-2022a 2022a
Abseil 20240722.0-GCCcore-13.3.0 2024a
absl-py 2.1.0-GCCcore-12.3.0 2023a
ABSOLUTE 1.0.6-foss-2020b-R-4.0.3 2020b
accelerate 0.33.0-foss-2023a 2023a
acl 2.2.53-GCCcore-8.3.0 2019b
ACTC 1.1-GCCcore-10.3.0 2021a
AdapterRemoval 2.3.3-GCC-11.3.0 2022a
adehabitatHR 0.4.21-foss-2021b-R-4.2.0 2021b
adjustText 0.7.3-foss-2022a 2022a
AdmixTools 8.0.2-foss-2023a-R-4.4.1-Perl-5.36.1 2023a
ADMIXTURE 1.3.0-x86_64 2023a
ads 1.5-9-foss-2021b-R-4.2.0 2021b
aenet 2.0.4-foss-2019b-mpi 2019b
AFNI 18.3.00-foss-2019a-Python-3.7.2 2019a
AfterQC 0.9.7-foss-2020b-Python-2.7.18 2020b
aicsimageio 4.9.4-foss-2021b 2021b
aiohttp 3.8.5-GCCcore-12.2.0 2022b
ALAMODE 1.4.2-foss-2022b 2022b
ald 1.2-foss-2020a-R-4.0.0 2020a
ALFA 1.1.1-foss-2019a-Python-3.7.2 2019a
alleleCount 4.3.0-GCC-12.2.0 2022b
almosthere 1.0.10-GCCcore-8.3.0 2019b
AlphaFold 2.3.2-foss-2022a-CUDA-11.7.0 2022a
AlphaPulldown 0.21.6-foss-2021a-CUDA-11.3.1 2021a
alsa-lib 1.2.10 2022b
alsa-lib 1.2.10 2023a
alsa-lib 1.2.10 2024a
Amber 22.0-foss-2021b-AmberTools-22.3 2021b
AMBiT 3.1.1-foss-2022a 2022a
Ambuild 2.0.0-foss-2023a 2023a
AMPL-MP 3.1.0-GCCcore-11.3.0 2022a
AMRFinderPlus 3.11.26-gompi-2022b 2022b
AMS 2023.104-gompi-2022a-openmpi 2022a
angsd 0.940-GCC-12.3.0 2023a
ANIcalculator 1.0-GCCcore-11.3.0 2022a
anndata 0.10.9-foss-2024a 2024a
anno 1.0-foss-2019a 2019a
ANSYS 2025R2 2024a
ANSYS_Rocky 2025R2 2024a
ANSYSEM 2024R2 2023a
ant 1.10.14-Java-11 2022a
ant 1.10.14-Java-11 2023a
ANTHRO 20230507-foss-2022a 2022a
ANTLR 2.7.7-GCCcore-9.3.0-Java-11 2020a
ANTs 2.5.0-foss-2021a 2021a
any2fasta 0.4.2-GCCcore-11.3.0 2022a
apcluster 1.4.8-foss-2021a 2021a
Apptainer Information Page system
APR 1.7.4-GCCcore-12.2.0 2022b
APR-util 1.6.3-GCCcore-12.2.0 2022b
ARACNe-AP 20180412-Java-11 2023a
ARAGORN 1.2.41-foss-2022b 2022b
archive 1.1.2-foss-2020b-R-4.0.3 2020b
Archive-Zip 1.68-GCCcore-11.3.0 2022a
archspec 0.2.5-GCCcore-13.3.0 2024a
Armadillo 14.0.3-foss-2024a 2024a
arpack-ng 3.9.1-foss-2024a 2024a
Arriba 2.5.0-GCC-13.3.0 2024a
Arrow 17.0.0-gfbf-2024a 2024a
arrow-R 17.0.0.1-foss-2024a-R-4.5.0 2024a
ArviZ 0.16.1-foss-2023a 2023a
ASCAT 3.1.2-foss-2022b-R-4.3.1 2022b
ASE 3.24.0-gfbf-2024a 2024a
Aspera-CLI 3.9.6.1467.159c5b1 2020b
assimp 5.4.3-GCCcore-13.3.0 2024a
astropy 5.0.4-foss-2021b 2021b
at-spi2-atk 2.38.0-GCCcore-12.2.0 2022b
at-spi2-core 2.54.0-GCCcore-13.3.0 2024a
ATAT 3_36-iomkl-2020b 2020b
ATK 2.38.0-GCCcore-12.2.0 2022b
attr 2.4.48-GCCcore-9.3.0 2020a
attrdict3 2.0.2-GCCcore-11.2.0 2021b
AUCell 1.8.0-foss-2019b-R-3.6.2 2019b
AUGUSTUS 3.5.0-foss-2022b 2022b
AUTO-07p 0.9.3-foss-2021a 2021a
Autoconf 2.72-GCCcore-13.3.0 2024a
Autoconf-archive 2023.02.20-GCCcore-11.3.0 2022a
AutoDock 4.2.6-GCC-8.3.0 2019b
AutoDock_Vina 1.1.2_linux_x86 2019b
autograd 1.6.3-foss-2022b 2022b
Automake 1.16.5-GCCcore-12.2.0 2022b
Autotools 20231222-GCCcore-13.3.0 2024a
awscli 2.17.54-GCCcore-12.3.0 2023a
bakta 1.9.4-foss-2022b 2022b
BamTools 2.5.2-GCC-12.2.0 2022b
BamUtil 1.0.15-GCC-12.3.0 2023a
Bandage 0.8.1-gompi-2023a 2023a
Barracuda_Virtual_Reactor 24.0.0-GCCcore-12.2.0 2022b
barrnap 0.9-gompi-2021b 2021b
basemap 1.2.2-foss-2020b 2020b
BaseSpaceSequenceHubCLI 1.0.0 2019a
BAT 2.11.0-foss-2024a-R-4.5.0 2024a
Battenberg 2.2.9-foss-2022b-R-4.3.1 2022b
BatVI 1.02-foss-2019a 2019a
BayesTraits 5.0.2-Linux 2023a
baymobil 0.3.7-gfbf-2023a 2023a
baysor 0.7.1-x86_x64-linux 2023a
Bazel 6.3.1-GCCcore-12.2.0 2022b
BBMap 39.19-GCC-12.3.0 2023a
bc 1.07.1-GCC-10.3.0 2021a
bcbio-gff 0.7.1-foss-2023a 2023a
BCFtools 1.21-GCC-13.3.0 2024a
bcl-convert 4.0.3-2el7.x86_64 2022a
bcl2fastq2 2.20.0-GCC-11.3.0 2022a
bcrypt 4.0.1-GCCcore-12.3.0 2023a
Beagle 5.1-25Nov19.28d-Java-11 2019b
beagle-lib 4.0.1-GCC-12.3.0 2023a
BEAR-Python-DataScience 2020a-foss-2020a-Python-3.8.2 2020a
BEAR-Python-MSc-Bioinformatics 2022b-foss-2022b 2022b
BEAR-Python-Sciences 2019b-foss-2019b-Python-3.7.4 2019b
BEAR-R-bio 2024a-foss-2024a-R-4.5.0 2024a
BEAR-R-economics 2020a-foss-2020a-R-4.0.0 2020a
BEAR-R-geo 2024a-foss-2024a-R-4.5.0 2024a
Beast 2.7.8-GCC-13.3.0 2024a
BeautifulSoup 4.12.3-GCCcore-13.3.0 2024a
BEDOPS 2.4.41-foss-2021b 2021b
BEDTools 2.31.1-GCC-12.3.0 2023a
bertini 1.6-gompi-2021b 2021b
betapart 1.6.1-foss-2024a-R-4.5.0 2024a
BGEN 1.1.6-GCCcore-8.3.0 2019b
bibtexparser 1.4.0-GCCcore-10.3.0 2021a
bigsnpr 1.8.1-foss-2020a-R-4.0.0 2020a
binutils 2.42 2024a
Bio-DB-BigFile 1.07-foss-2019b-Perl-5.30.0 2019b
Bio-DB-BigFile-jksrc v375-foss-2019a 2019a
Bio-DB-HTS 3.01-GCCcore-8.3.0-Perl-5.30.0 2019b
Bio-SearchIO-hmmer 1.7.3-GCC-11.2.0 2021b
BiobankRead-Bash 3.1.1-20190507-foss-2022a 2022a
biofluff 3.0.3-foss-2019b-Python-3.7.4 2019b
biom-format 2.1.15-foss-2022b 2022b
BiomasaFP 0.3-foss-2020b-R-4.0.3 2020b
BIOMASS 2.1.8-foss-2021b-R-4.2.0 2021b
BioPerl 1.7.8-GCCcore-11.3.0 2022a
Biopython 1.86-gfbf-2023a 2023a
BioServices 1.11.2-foss-2022b 2022b
Bisbee 20210108-foss-2021b-R-4.2.0 2021b
Bismark 0.24.2-foss-2021b 2021b
Bison 3.8.2-GCCcore-12.2.0 2022b
BLAST+ 2.16.0-gompi-2024a 2024a
BLAT 3.7-GCC-12.2.0 2022b
Blender 3.4.1-linux-x86_64-CUDA-11.7.0 2022a
BLIS 1.0-GCC-13.3.0 2024a
Blitz++ 1.0.2-GCCcore-9.3.0 2020a
BlobTools 1.1.1-foss-2023a 2023a
blockCV 2.1.4-foss-2021a-R-4.1.0 2021a
Blosc 1.21.5-GCCcore-12.3.0 2023a
Blosc2 2.8.0-GCCcore-12.2.0 2022b
BMDExpress2 2.30.0502 2020b
bmtagger 3.101-gompi-2023a-Java-11 2023a
BNC 2.13.1-GCCcore-12.3.0 2023a
bokeh 3.6.0-gfbf-2024a 2024a
Bonito 0.8.1-foss-2023a-CUDA-12.1.1 2023a
Boost 1.85.0-GCC-13.3.0 2024a
Boost.MPI 1.82.0-gompi-2023a 2023a
Boost.Python 1.85.0-GCC-13.3.0 2024a
Boost.Python-NumPy 1.82.0-gfbf-2023a 2023a
boto3 1.35.36-GCCcore-13.3.0 2024a
Bowtie 1.3.1-GCC-12.2.0 2022b
Bowtie2 2.5.4-GCC-12.3.0 2023a
Bracken 2.9-GCCcore-12.3.0 2023a
BRHCLUS 4.7.2-foss-2021a 2021a
Brotli 1.1.0-GCCcore-13.3.0 2024a
Brunsli 0.1-GCCcore-12.2.0 2022b
BuDDy 2.4-GCCcore-12.2.0 2022b
build 1.0.3-foss-2023a 2023a
Bullet 2.88-foss-2019a-Python-3.7.2 2019a
BUSCO 6.0.0-foss-2024a 2024a
BWA 0.7.17-GCCcore-11.3.0 2022a
bwa-mem2-meth 0.2.2-GCC-10.2.0 2020b
bx-python 0.10.0-foss-2023a 2023a
bzip2 1.0.8-GCCcore-12.3.0 2023a
c-ares 1.19.1-GCCcore-12.3.0 2023a
C3D 1.0.0 2019a
cads-api-client 1.5.0-GCCcore-12.3.0 2023a
CAGEr 1.34.0-foss-2021a-R-4.1.0 2021a
cairo 1.18.0-GCCcore-13.3.0 2024a
cairomm 1.16.2-GCC-11.3.0 2022a
canopus_treemap 0.0.1-foss-2021b 2021b
Cantera 3.2.0-foss-2024a 2024a
canu 2.2-GCCcore-11.3.0 2022a
Canvas 1.40.0.1613 2020a
CapnProto 0.10.3-GCCcore-12.2.0 2022b
Cardinal 2.6.0-foss-2020a-R-4.0.0 2020a
cargo-c 0.10.14-GCCcore-13.3.0 2024a
Cartopy 0.24.1-foss-2024a 2024a
Cas-OFFinder 2.4.1-intel-compilers-2023.1.0 2023a
CASTEP 25.1.2-intel-2024a 2024a
CATALYST 1.10.3-foss-2019b-R-3.6.2 2019b
Catch2 3.8.0-GCCcore-13.3.0 2024a
cba 0.2-21-foss-2019b-R-3.6.2 2019b
Cbc 2.10.12-foss-2024a 2024a
ccache 4.9-GCCcore-12.3.0 2023a
CCL 1.12.1-GCCcore-10.3.0 2021a
CD-HIT 4.8.1-GCC-12.2.0 2022b
cddlib 0.94m-GCCcore-11.3.0 2022a
CDO 2.2.2-gompi-2023a 2023a
cds_insertion 0.1dev-20240521-foss-2023a 2023a
cdsapi 0.7.4-GCCcore-12.3.0 2023a
CeleScope 2.9.0-foss-2024a 2024a
cell2location 0.1.3-foss-2022a 2022a
cellassign 520de59-foss-2019b-Python-3.7.4-R-3.6.2 2019b
CellBender 0.3.2-foss-2023a 2023a
CellChat 20210814-foss-2020a-R-4.0.0 2020a
celldex 1.10.1-foss-2022b-R-4.3.1 2022b
cellphonedb 2.1.1-foss-2019b-Python-3.7.4-R-3.6.2 2019b
CellPhoneDB 3.1.0-foss-2020b 2020b
Cellphy 0.9.2-foss-2022b 2022b
Cellpose 2.2-foss-2022a 2022a
CellRanger 9.0.1 2023a
CellRanger-ARC 1.0.1 2020a
CellRanger-ATAC 2.0.0 2020a
CellRank 1.5.1-foss-2021a 2021a
Centrifuge 1.0.4.2-gompi-2023a 2023a
Cereal 1.3.2 2023a
ceres-solver 1.14.0-foss-2019b 2019b
CESM 2.1.5-foss-2023a 2023a
cf-plot 3.0.6-foss-2019b-Python-3.7.4 2019b
cf-python 3.4.0-foss-2019b-Python-3.7.4 2019b
cffi 1.16.0-GCCcore-13.3.0 2024a
CFITSIO 4.4.1-GCCcore-13.3.0 2024a
cftime 1.0.3.4-foss-2019a-Python-2.7.15 2019a
CGAL 5.6.1-GCCcore-13.3.0 2024a
cgat 0.6.5-foss-2021a 2021a
Cgl 0.60.8-foss-2024a 2024a
CGmapTools 0.1.3-foss-2022a 2022a
ChAMP 2.18.3-foss-2020a-R-4.0.0 2020a
CharLS 2.4.2-GCCcore-12.2.0 2022b
Chart-Gnuplot 0.23-GCCcore-12.3.0 2023a
Check 0.15.2-GCCcore-12.2.0 2022b
CheckM 1.2.2-foss-2022a 2022a
CheckM-Database 2015_01_16 2022a
CheMPS2 1.8.12-foss-2023a 2023a
ChimeraX 1.5-linux-x86_64 2021b
ChIPseeker 1.28.3-foss-2021a-R-4.1.0 2021a
chopper 0.10.0b-GCCcore-12.3.0 2023a
CIF2Cell 1.2.10-GCCcore-12.2.0 2022b
Circos 0.69-9-GCCcore-12.2.0 2022b
CIRI-long 1.1.0-foss-2021b 2021b
Clair3 1.0.4-foss-2022a 2022a
Clairvoyante 1.02-foss-2019a-Python-3.7.2 2019a
Clang 18.1.8-GCCcore-13.3.0 2024a
CLHEP 2.4.6.2-GCC-11.3.0 2022a
clingo 5.4.0-GCCcore-8.3.0-Python-3.7.4 2019b
clinker 0.0.28-foss-2022b 2022b
CloudCompare 2.12.0-foss-2021a 2021a
Clp 1.17.10-foss-2024a 2024a
clust 1.12.0-foss-2020a-Python-3.8.2 2020a
ClustalW2 2.1-foss-2019b 2019b
clusterProfiler 4.4.4-foss-2021b-R-4.2.0 2021b
ClusterR 1.2.1-foss-2019b-R-3.6.2 2019b
clustrd 1.3.7-foss-2019b-R-3.6.2 2019b
cma 3.3.0-foss-2022b 2022b
CMake 3.31.8-GCCcore-13.3.0 2024a
CMSeq 1.0.4-foss-2021b 2021b
cnpy 20180601-foss-2021a 2021a
CNVkit 0.9.8-foss-2020a-Python-3.8.2-R-4.0.0 2020a
CNVnator 0.4.1-foss-2019b-Python-3.7.4 2019b
code-server 4.107.0 2024a
CODEX2 20191031-foss-2019a-R-3.6.0 2019a
CodingQuarry 2.0-GCC-8.3.0 2019b
coexist 0.3.2-foss-2022b 2022b
Coin 4.0.0-GCC-10.3.0 2021a
CoinUtils 2.11.12-GCC-13.3.0 2024a
colorRamps 2.3-foss-2019b-R-3.6.2 2019b
COLUMBUS 7-20250612-intel-2023a 2023a
commonmark 0.9.1-GCCcore-8.3.0-Python-3.7.4 2019b
Compass 20220402-foss-2020b 2020b
Compress-Raw-Zlib 2.213-GCCcore-13.3.0 2024a
COMSOL 6.1.0.357 2022b
CONCOCT 1.1.0-foss-2023a-Python-2.7.18 2023a
ConcurrentQueue 1.0.3-GCCcore-11.2.0 2021b
Config-IniFiles 3.000003-GCCcore-10.3.0 2021a
configr 0.3.5-foss-2023a 2023a
configurable-http-proxy 4.5.6-GCCcore-12.3.0 2023a
ConnectomeWorkbench 1.5.0-GCCcore-10.3.0 2021a
contextily 1.5.0-foss-2023a 2023a
conumee 1.18.0-foss-2019a-R-3.6.0 2019a
CoordgenLibs 3.0.2-gompi-2022b 2022b
Coreutils 8.32-GCCcore-8.3.0 2019b
corner 2.2.3-gfbf-2024a 2024a
CP2K 2024.3-foss-2023a 2023a
cpio 2.15-GCCcore-12.3.0 2023a
cpl 7.1.4-foss-2020b 2020b
CPLEX 20.10-GCCcore-10.2.0 2020b
CppUnit 1.15.1-GCCcore-11.3.0 2022a
cppy 1.2.1-GCCcore-12.2.0 2022b
cppzmq 4.10.0 2023a
CREST 3.0.1-gfbf-2022b 2022b
cryoDRGN 0.3.5-foss-2020b 2020b
cryptography 42.0.8-GCCcore-13.3.0 2024a
CRYSTAL 23-iomkl-2021b 2021b
CSBDeep 0.4.1-foss-2019a-Python-3.7.2 2019a
CST-Studio-Suite 2026.SP2-GCCcore-13.3.0-Java-17 2024a
CSTools 3.1.0-foss-2019b-R-3.6.2 2019b
ctffind 4.1.14-foss-2021a 2021a
CTPL 0.0.2-GCC-10.3.0 2021a
cub 1.11.0-foss-2021a-CUDA-11.3.1 2021a
cuCIM 23.2.0-foss-2021b-CUDA-11.4.1 2021b
CUDA 12.6.0 2023a
CUDA 12.6.0 2024a
CUDA-Python 12.1.0-gfbf-2023a-CUDA-12.1.1 2023a
CUDAcore 11.1.1 2020b
cuDNN 9.8.0.87-CUDA-12.6.0 2024a
CUnit 2.1-3-GCCcore-11.2.0 2021b
CuPy 11.4.0-foss-2021b-CUDA-11.4.1 2021b
curatedMetagenomicData 3.16.1-foss-2024a-R-4.5.0 2024a
cURL 8.7.1-GCCcore-13.3.0 2024a
Curses 1.45-GCCcore-12.3.0 2023a
Curves+ 2015-foss-2019a 2019a
cutadapt 5.1-GCCcore-13.3.0 2024a
cuTENSOR 1.6.1.5-CUDA-11.4.1 2021b
cxxopts 3.2.0-GCCcore-12.3.0 2023a
cyCombine 0.2.15-foss-2021b-R-4.2.0 2021b
Cython 3.0.10-GCCcore-13.3.0 2024a
czifile 2019.7.2-foss-2021b 2021b
darshan 3.5.0-intel-2023a 2023a
dask 2025.5.1-gfbf-2024a 2024a
DataCombine 0.2.21-foss-2021a-R-4.1.0 2021a
datamash 1.8-GCCcore-10.2.0 2020b
Date-Manip 6.95-GCCcore-12.3.0 2023a
dateutils 0.4.7-GCCcore-8.3.0 2019b
dav1d 1.5.1-GCCcore-13.3.0 2024a
DB 18.1.40-GCCcore-12.2.0 2022b
DB_File 1.859-GCCcore-12.3.0 2023a
DBD-mysql 4.052-GCC-12.3.0 2023a
dbscan 1.1-8-foss-2020a-R-4.0.0 2020a
DBus 1.15.8-GCCcore-13.3.0 2024a
dbus-glib 0.112-GCCcore-11.2.0 2021b
DCC 0.5.0-foss-2021b 2021b
dcm2bids 3.1.1-foss-2022b 2022b
dcm2niix 1.0.20230411-GCCcore-12.2.0 2022b
DCMTK 3.6.7-GCCcore-11.3.0 2022a
deal.II 9.7.1-foss-2024a 2024a
DECODE 0.10.0-fosscuda-2020b 2020b
Deepbinner c261ae9-foss-2019b-Python-3.7.4 2019b
DeepCell 0.11.1-foss-2021b-CUDA-11.4.1 2021b
deepdiff 6.7.1-GCCcore-12.3.0 2023a
DeepLabCut 2.3.6-foss-2022a-CUDA-11.7.0 2022a
DeepMod 0.1.1-foss-2019a-Python-3.7.2 2019a
deepTools 3.5.2-foss-2022a 2022a
defense-finder 1.3.0-foss-2022b 2022b
delft3d 69179-iimpi-2021b 2021b
delft3dfm 2023.02-intel-2022a 2022a
DeltaLake 1.1.0-gfbf-2024a 2024a
demultiplex 1.2.2-foss-2021a 2021a
DendroPy 5.0.8-GCCcore-13.3.0 2024a
depmixS4 1.5-1-foss-2024a-R-4.5.0 2024a
deSALT 1.5-foss-2019a 2019a
destiny 2.14.0-foss-2019a-R-3.6.0 2019a
Devel-PPPort 3.68-GCCcore-12.3.0 2023a
DEXSeq 1.50.0-foss-2023a-R-4.4.1 2023a
DFT-D4 3.6.0-intel-2022a 2022a
DFTB+ 23.1-foss-2023a 2023a
dftd4 3.7.0-foss-2023a 2023a
DIAMOND 2.1.8-GCC-12.2.0 2022b
DiffBind 2.14.0-foss-2019b-R-3.6.2 2019b
digitalDLSorteR 1.0.1-foss-2022b-R-4.3.1 2022b
dill 0.3.9-GCCcore-13.3.0 2024a
diplib 3.3.0-foss-2021a 2021a
DirichletMultinomial 1.32.0-foss-2020a-R-4.0.0 2020a
DivNet 31e04e2-foss-2020a-R-4.0.0 2020a
DL_MESO 2.7-foss-2020a 2020a
DL_POLY 4.10.0-foss-2020a 2020a
dm-tree 0.1.8-GCCcore-11.3.0 2022a
DMACRYS 2.3.1.1-GCCcore-12.3.0 2023a
DMRcaller 1.36.0-foss-2023a-R-4.4.1 2023a
docstring 1.0.0-foss-2021a 2021a
doFuture 0.10.0-foss-2020a-R-4.0.0 2020a
dominate 2.9.1-GCCcore-12.3.0 2023a
doppio 1.2.1 2024a
dorado 0.9.0-foss-2023a-CUDA-12.1.1 2023a
DosageConvertor 6761a8b-foss-2019a 2019a
dotNET-SDK 3.1.424-linux-x64 2021b
double-conversion 3.3.0-GCCcore-12.3.0 2023a
DoubletFinder 20200901-foss-2019b-R-3.6.2 2019b
Doxygen 1.11.0-GCCcore-13.3.0 2024a
DPClust 2.2.8-foss-2019a-R-3.6.0 2019a
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ncurses 6.5 2024a
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protobuf 24.0-GCCcore-12.3.0 2023a
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PyCharm 2024.2.2 2023a
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pyhpo 3.2.2-gfbf-2022b 2022b
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pymatgen 2023.12.18-foss-2023a 2023a
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python-cdo 1.6.0-foss-2023a 2023a
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python-parasail 1.3.4-foss-2023a 2023a
python-xlib 0.32-GCCcore-10.3.0 2021a
python-xxhash 3.4.1-GCCcore-12.3.0 2023a
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PyWavelets 1.8.0-foss-2024a 2024a
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QIIME2 2025.4 2023a
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Qtconsole 5.5.1-GCCcore-12.3.0 2023a
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QtPy 2.4.1-GCCcore-12.3.0 2023a
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quicktree 2.5-GCCcore-9.3.0 2020a
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R-bundle-Bioconductor 3.21-foss-2024a-R-4.5.0 2024a
R-bundle-CRAN 2025.06-foss-2024a 2024a
R-keras 2.2.5.0-foss-2019b-Python-3.7.4-R-3.6.2 2019b
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RagTag 2.1.0-foss-2022a 2022a
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RapidJSON 1.1.0-GCCcore-12.2.0 2022b
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RAPIDS 24.4-foss-2023a-CUDA-12.1.1 2023a
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rasterio 1.4.3-foss-2024a 2024a
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RAVE 2.3.1-foss-2023a-CUDA-12.1.1 2023a
RAxML 8.2.12-gompi-2022a-avx2 2022a
RAxML-NG 1.1.0-GCC-11.3.0 2022a
rcdk 3.6.0-foss-2021a 2021a
RcisTarget 1.8.0-foss-2020a-R-4.0.0 2020a
rclone 1.68.1 2023a
Rcorrector 1.0.5-GCC-11.2.0 2021b
RcppAnnoy 0.0.19-foss-2020a-R-4.0.0 2020a
RDFlib 7.0.0-GCCcore-12.2.0 2022b
RDKit 2024.03.3-foss-2023a 2023a
RE2 2024-07-02-GCCcore-13.3.0 2024a
re2c 3.1-GCCcore-12.3.0 2023a
reactorch 0.1.2-foss-2022a 2022a
readlif 0.2.1-GCCcore-8.3.0-Python-3.7.4 2019b
RECON 1.08-GCC-12.3.0 2023a
Redis 6.2.6-GCC-11.2.0 2021b
refnx 0.1.19-foss-2020a-Python-3.8.2 2020a
regtools 0.5.2-foss-2020a 2020a
RELION 5.0.0-foss-2023a-CUDA-12.1.1 2023a
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RepeatMasker 4.1.7-p1-foss-2023a 2023a
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tbl2asn 20230713-linux64 2022a
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Trimmomatic 0.39-Java-11 2021b
Trimmomatic 0.39-Java-11 2022a
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USEARCH 11.0.667-i86linux32 2024a
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versioningit 3.1.2-GCCcore-13.3.0 2024a
VGAM 1.1-3-foss-2019b-R-3.6.2 2019b
VIBRANT 1.2.1-foss-2019b-Python-3.7.4 2019b
ViennaRNA 2.6.4-foss-2022b 2022b
virtualenv 20.26.2-GCCcore-13.3.0 2024a
visdom 0.2.4-gfbf-2023a 2023a
VisPy 0.12.2-gfbf-2023a 2023a
VMD 1.9.4a57-foss-2021a 2021a
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VOTCA 1.5.1-foss-2019b 2019b
VSCode 2.1698 2019b
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vt 2187ff6-foss-2019b 2019b
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wcslib 7.6-GCCcore-10.2.0 2020b
WebKitGTK+ 2.41.4-foss-2023a 2023a
WEKA 3.8.4-Java-11 2019b
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xarray 2024.11.0-gfbf-2024a 2024a
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xorg-macros 1.20.1-GCCcore-13.3.0 2024a
xpa 2.1.20-foss-2020b 2020b
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xtensor 0.25.0-foss-2024a 2024a
xterm 366-foss-2020a 2020a
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zstd 1.5.6-GCCcore-13.3.0 2024a