Installed Applications: 2022a

Applications available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). In any one job, or session, you should use applications from only one BEAR Apps Version.

Application Version
aiohttp 3.8.3-GCCcore-11.3.0
ANSYS 2023R1
ant 1.10.12-Java-11
arpack-ng 3.8.0-foss-2022a
Arrow 8.0.0-foss-2022a-CUDA-11.7.0
Arrow 8.0.0-foss-2022a
ATK 2.38.0-GCCcore-11.3.0
at-spi2-atk 2.38.0-GCCcore-11.3.0
at-spi2-core 2.44.1-GCCcore-11.3.0
Autoconf 2.71-GCCcore-11.3.0
Automake 1.16.5-GCCcore-11.3.0
Autotools 20220317-GCCcore-11.3.0
Barracuda_Virtual_Reactor 22.1.1-GCCcore-11.3.0
Bazel 5.1.1-GCCcore-11.3.0
bcl-convert 4.0.3-2el7.x86_64
BeautifulSoup 4.10.0-GCCcore-11.3.0
binutils 2.38-GCCcore-11.3.0
binutils 2.38
Bison 3.8.2-GCCcore-11.3.0
Bison 3.8.2
Blender 3.4.1-linux-x86_64-CUDA-11.7.0
BLIS 0.9.0-GCC-11.3.0
Blosc 1.21.3-GCCcore-11.3.0
Blosc2 2.6.1-GCCcore-11.3.0
bokeh 2.4.3-foss-2022a
Boost 1.79.0-GCC-11.3.0
Brotli 1.0.9-GCCcore-11.3.0
bzip2 1.0.8-GCCcore-11.3.0
cairo 1.17.4-GCCcore-11.3.0
cell2location 0.1.3-foss-2022a-CUDA-11.7.0
cell2location 0.1.3-foss-2022a
Cellpose 2.2-foss-2022a-CUDA-11.7.0
Cellpose 2.2-foss-2022a
Clang 13.0.1-GCCcore-11.3.0
CMake 3.24.3-GCCcore-11.3.0
CMake 3.23.1-GCCcore-11.3.0
cppy 1.2.1-GCCcore-11.3.0
CUDA 11.7.0
cuDNN 8.4.1.50-CUDA-11.7.0
cURL 7.83.0-GCCcore-11.3.0
dask 2022.10.0-foss-2022a
DB 18.1.40-GCCcore-11.3.0
DBus 1.14.0-GCCcore-11.3.0
deepdiff 5.8.1-GCCcore-11.3.0
dill 0.3.6-GCCcore-11.3.0
dm-tree 0.1.8-GCCcore-11.3.0
double-conversion 3.2.0-GCCcore-11.3.0
Eigen 3.4.0-GCCcore-11.3.0
elfutils 0.187-GCCcore-11.3.0
expat 2.4.8-GCCcore-11.3.0
expecttest 0.1.3-GCCcore-11.3.0
FFmpeg 4.4.2-GCCcore-11.3.0
FFTW 3.3.10-NVHPC-22.7-CUDA-11.7.0
FFTW 3.3.10-GCC-11.3.0
FFTW.MPI 3.3.10-nvompi-2022.07
FFTW.MPI 3.3.10-gompi-2022a
flatbuffers 2.0.7-GCCcore-11.3.0
flatbuffers-python 2.0-GCCcore-11.3.0
flex 2.6.4-GCCcore-11.3.0
flex 2.6.4
FlexiBLAS 3.2.0-NVHPC-22.7-CUDA-11.7.0
FlexiBLAS 3.2.0-GCC-11.3.0
fontconfig 2.14.0-GCCcore-11.3.0
foss 2022a
freetype 2.12.1-GCCcore-11.3.0
FriBidi 1.0.12-GCCcore-11.3.0
GCC 11.3.0
GCCcore 11.3.0
Gdk-Pixbuf 2.42.8-GCCcore-11.3.0
GDRCopy 2.3-GCCcore-11.3.0
gettext 0.21-GCCcore-11.3.0
gettext 0.21
Ghostscript 9.56.1-GCCcore-11.3.0
giflib 5.2.1-GCCcore-11.3.0
git 2.36.0-GCCcore-11.3.0-nodocs
GLib 2.72.1-GCCcore-11.3.0
GLPK 5.0-GCCcore-11.3.0
GMP 6.2.1-GCCcore-11.3.0
GObject-Introspection 1.72.0-GCCcore-11.3.0
gompi 2022a
gperf 3.1-GCCcore-11.3.0
Graphene 1.10.8-GCCcore-11.3.0
graphite2 1.3.14-GCCcore-11.3.0
groff 1.22.4-GCCcore-11.3.0
GSL 2.7-GCC-11.3.0
GST-plugins-bad 1.20.2-GCC-11.3.0
GST-plugins-base 1.20.2-GCC-11.3.0
GStreamer 1.20.2-GCC-11.3.0
GTK2 2.24.33-GCCcore-11.3.0
GTK4 4.7.0-GCC-11.3.0
gzip 1.12-GCCcore-11.3.0
h5py 3.7.0-foss-2022a
HarfBuzz 4.2.1-GCCcore-11.3.0
HDF5 1.13.1-gompi-2022a
HDF5 1.12.2-gompi-2022a
help2man 1.49.2-GCCcore-11.3.0
HPL 2.3-foss-2022a
HTSlib 1.16-GCC-11.3.0
hwloc 2.7.1-GCCcore-11.3.0
hypothesis 6.46.7-GCCcore-11.3.0
ICU 71.1-GCCcore-11.3.0
igraph 0.10.3-foss-2022a
IGV 2.16.0-Java-11
iimpi 2022a
imageio 2.22.2-foss-2022a
ImageMagick 7.1.0-37-GCCcore-11.3.0
Imath 3.1.5-GCCcore-11.3.0
imkl 2022.1.0
imkl-FFTW 2022.1.0-iimpi-2022a
impi 2021.6.0-intel-compilers-2022.1.0
intel 2022a
intel-compilers 2022.1.0
InterProScan 5.61-93.0-foss-2022a
intltool 0.51.0-GCCcore-11.3.0
IPython 8.5.0-GCCcore-11.3.0
JasPer 2.0.33-GCCcore-11.3.0
Java 11.0.16
Java 11
jax 0.4.4-foss-2022a-CUDA-11.7.0
jax 0.4.4-foss-2022a
jbigkit 2.1-GCCcore-11.3.0
JsonCpp 1.9.5-GCCcore-11.3.0
LAME 3.100-GCCcore-11.3.0
leidenalg 0.9.1-foss-2022a
Leptonica 1.83.0-GCCcore-11.3.0
libarchive 3.6.1-GCCcore-11.3.0
libdeflate 1.10-GCCcore-11.3.0
libdrm 2.4.110-GCCcore-11.3.0
libepoxy 1.5.10-GCCcore-11.3.0
libevent 2.1.12-GCCcore-11.3.0
libfabric 1.15.1-GCCcore-11.3.0
libffi 3.4.2-GCCcore-11.3.0
libgd 2.3.3-GCCcore-11.3.0
libGLU 9.0.2-GCCcore-11.3.0
libglvnd 1.4.0-GCCcore-11.3.0
libjpeg-turbo 2.1.3-GCCcore-11.3.0
libpciaccess 0.16-GCCcore-11.3.0
libpng 1.6.37-GCCcore-11.3.0
libpng 1.5.30
libreadline 8.1.2-GCCcore-11.3.0
libsodium 1.0.18-GCCcore-11.3.0
LibTIFF 4.3.0-GCCcore-11.3.0
libtool 2.4.7-GCCcore-11.3.0
libunwind 1.6.2-GCCcore-11.3.0
libwebp 1.2.4-GCCcore-11.3.0
libxml2 2.9.13-GCCcore-11.3.0
libxslt 1.1.34-GCCcore-11.3.0
libyaml 0.2.5-GCCcore-11.3.0
LittleCMS 2.13.1-GCCcore-11.3.0
LLVM 12.0.1-GCCcore-11.3.0
LMDB 0.9.29-GCCcore-11.3.0
lxml 4.9.1-GCCcore-11.3.0
lz4 1.9.3-GCCcore-11.3.0
LZO 2.10-GCCcore-11.3.0
M4 1.4.19-GCCcore-11.3.0
M4 1.4.19
magma 2.6.2-foss-2022a-CUDA-11.7.0
Mako 1.2.0-GCCcore-11.3.0
matplotlib 3.5.2-foss-2022a
Mesa 22.0.3-GCCcore-11.3.0
Meson 0.62.1-GCCcore-11.3.0
Miniconda3 4.12.0
Miniconda3 22.11.1-1
MNE-Python 1.3.1-foss-2022a
modbam2bed 0.7.0-GCC-11.3.0
MPFR 4.1.0-GCCcore-11.3.0
NASM 2.15.05-GCCcore-11.3.0
NCCL 2.12.12-GCCcore-11.3.0-CUDA-11.7.0
ncurses 6.3-GCCcore-11.3.0
ncurses 6.2
ncurses 5.9
networkx 2.8.4-foss-2022a
NiBabel 4.0.2-foss-2022a
Ninja 1.10.2-GCCcore-11.3.0
NLTK 3.8-foss-2022a
nodejs 16.15.1-GCCcore-11.3.0
NSPR 4.34-GCCcore-11.3.0
NSS 3.79-GCCcore-11.3.0
nsync 1.25.0-GCCcore-11.3.0
numactl 2.0.14-GCCcore-11.3.0
numba 0.56.4-foss-2022a
NVHPC 22.7-CUDA-11.7.0
nvofbf 2022.07
nvompi 2022.07
ont-remora 2.0.0-foss-2022a-CUDA-11.7.0
ont-remora 2.0.0-foss-2022a
OpenBLAS 0.3.20-NVHPC-22.7-CUDA-11.7.0
OpenBLAS 0.3.20-GCC-11.3.0
OpenCV 4.6.0-foss-2022a-CUDA-11.7.0-contrib
OpenCV 4.6.0-foss-2022a-contrib
OpenEXR 3.1.5-GCCcore-11.3.0
OpenJPEG 2.5.0-GCCcore-11.3.0
OpenMPI 4.1.4-NVHPC-22.7-CUDA-11.7.0
OpenMPI 4.1.4-GCC-11.3.0
OpenMPI-container 4.1.4
OpenPGM 5.2.122-GCCcore-11.3.0
openpyxl 3.0.10-GCCcore-11.3.0
OpenSSL 1.1
OSU-Micro-Benchmarks 5.9-iimpi-2022a
OSU-Micro-Benchmarks 5.9-gompi-2022a
Pango 1.50.7-GCCcore-11.3.0
parasail 2.6-GCC-11.3.0
pcgr 1.2.0
pcgrr 1.2.0
PCRE 8.45-GCCcore-11.3.0
PCRE2 10.40-GCCcore-11.3.0
Perl 5.34.1-GCCcore-11.3.0
pharokka 1.2.0
Pillow 9.1.1-GCCcore-11.3.0
pixman 0.40.0-GCCcore-11.3.0
pkgconf 1.8.0-GCCcore-11.3.0
pkgconf 1.8.0
pkg-config 0.29.2-GCCcore-11.3.0
pkgconfig 1.5.5-GCCcore-11.3.0-python
PMIx 4.1.2-GCCcore-11.3.0
poetry 1.2.2-GCCcore-11.3.0
protobuf 3.19.4-GCCcore-11.3.0
protobuf-python 3.19.4-GCCcore-11.3.0
pybind11 2.9.2-GCCcore-11.3.0
PyCairo 1.21.0-GCCcore-11.3.0
py-cpuinfo 9.0.0-GCCcore-11.3.0
pydicom 2.3.0-GCCcore-11.3.0
PyGObject 3.42.1-GCCcore-11.3.0
PyQt5 5.15.5-GCCcore-11.3.0
Pysam 0.20.0-GCC-11.3.0
PyTables 3.8.0-foss-2022a
pytesseract 0.3.10-foss-2022a
pytest-xdist 2.5.0-GCCcore-11.3.0
Python 3.10.4-GCCcore-11.3.0-bare
Python 3.10.4-GCCcore-11.3.0
Python 2.7.18-GCCcore-11.3.0-bare
python-igraph 0.10.3-foss-2022a
python-parasail 1.3.3-foss-2022a
PyTorch 1.12.1-foss-2022a-CUDA-11.7.0
PyTorch 1.12.1-foss-2022a
PyTorch-Lightning 1.9.3-foss-2022a-CUDA-11.7.0
PyTorch-Lightning 1.9.3-foss-2022a
PyYAML 6.0-GCCcore-11.3.0
Qhull 2020.2-GCCcore-11.3.0
Qt5 5.15.5-GCCcore-11.3.0
QtPy 2.3.0-GCCcore-11.3.0
RapidJSON 1.1.0-GCCcore-11.3.0
RE2 2022-06-01-GCCcore-11.3.0
re2c 2.2-GCCcore-11.3.0
Rust 1.60.0-GCCcore-11.3.0
ScaLAPACK 2.2.0-nvompi-2022.07-fb
ScaLAPACK 2.2.0-gompi-2022a-fb
scanpy 1.9.1-foss-2022a
scikit-build 0.15.0-GCCcore-11.3.0
scikit-image 0.19.3-foss-2022a
scikit-learn 1.1.2-foss-2022a
scikit-misc 0.1.4-foss-2022a
SciPy-bundle 2022.05-foss-2022a
scvi-tools 0.20.1-foss-2022a-CUDA-11.7.0
scvi-tools 0.20.1-foss-2022a
Seaborn 0.12.1-foss-2022a
SHAP 0.41.0-foss-2022a
snappy 1.1.9-GCCcore-11.3.0
SQLite 3.38.3-GCCcore-11.3.0
STAR-CCM+ 18.02.008
Stata 17.rev2023-01-10
statsmodels 0.13.1-foss-2022a
Szip 2.1.1-GCCcore-11.3.0
Tcl 8.6.12-GCCcore-11.3.0
tensorboardX 2.5.1-foss-2022a
TensorFlow 2.11.0-foss-2022a-CUDA-11.7.0
TensorFlow 2.11.0-foss-2022a
tesseract 5.3.0-GCCcore-11.3.0
Tk 8.6.12-GCCcore-11.3.0
Tkinter 3.10.4-GCCcore-11.3.0
tqdm 4.64.0-GCCcore-11.3.0
UCC 1.0.0-GCCcore-11.3.0
UCC-CUDA 1.0.0-GCCcore-11.3.0-CUDA-11.7.0
UCX 1.12.1-GCCcore-11.3.0
UCX-CUDA 1.12.1-GCCcore-11.3.0-CUDA-11.7.0
umap-learn 0.5.3-foss-2022a
UnZip 6.0-GCCcore-11.3.0
utf8proc 2.7.0-GCCcore-11.3.0
util-linux 2.38-GCCcore-11.3.0
VASP 6.3.2-nvofbf-2022.07
VASP 6.3.2-intel-2022a
VASP 6.3.2-foss-2022a-Wannier90
VASP 6.3.2-foss-2022a
VTK 9.2.2-foss-2022a
Wand 0.6.11-foss-2022a
Wannier90 3.1.0-foss-2022a-serial
Wayland 1.20.0-GCCcore-11.3.0
X11 20220504-GCCcore-11.3.0
x264 20220620-GCCcore-11.3.0
x265 3.5-GCCcore-11.3.0
xorg-macros 1.19.3-GCCcore-11.3.0
XZ 5.2.5-GCCcore-11.3.0
Yasm 1.3.0-GCCcore-11.3.0
Z3 4.10.2-GCCcore-11.3.0
ZeroMQ 4.3.4-GCCcore-11.3.0
Zip 3.0-GCCcore-11.3.0
zlib 1.2.12-GCCcore-11.3.0
zlib 1.2.12
zlib 1.2.11
zstd 1.5.2-GCCcore-11.3.0