Installed Applications: 2022a

Applications available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). In any one job, or session, you should use applications from only one BEAR Apps Version.

Application Version
4ti2 1.6.10-GCC-11.3.0
aiohttp 3.8.3-GCCcore-11.3.0
AlphaFold 2.3.1-foss-2022a-CUDA-11.7.0
AlphaFold 2.3.1-foss-2022a
ANSYS 2023R1
ant 1.10.12-Java-11
ANTHRO 20230507-foss-2022a
arpack-ng 3.8.0-foss-2022a
Arrow 8.0.0-foss-2022a-CUDA-11.7.0
Arrow 8.0.0-foss-2022a
arrow-R 8.0.0-foss-2022a-R-4.2.3
ATK 2.38.0-GCCcore-11.3.0
at-spi2-atk 2.38.0-GCCcore-11.3.0
at-spi2-core 2.44.1-GCCcore-11.3.0
Autoconf 2.71-GCCcore-11.3.0
Automake 1.16.5-GCCcore-11.3.0
Autotools 20220317-GCCcore-11.3.0
BamTools 2.5.2-GCC-11.3.0
Barracuda_Virtual_Reactor 22.1.1-GCCcore-11.3.0
Bazel 5.1.1-GCCcore-11.3.0
bcl2fastq2 2.20.0-GCC-11.3.0
bcl-convert 4.0.3-2el7.x86_64
BEAR-R-bio 2022a-foss-2022a-R-4.2.3
BeautifulSoup 4.10.0-GCCcore-11.3.0
BEDTools 2.30.0-GCC-11.3.0
binutils 2.38-GCCcore-11.3.0
binutils 2.38
Biopython 1.79-foss-2022a
Bison 3.8.2-GCCcore-11.3.0
Bison 3.8.2
Blender 3.4.1-linux-x86_64-CUDA-11.7.0
BLIS 0.9.0-GCC-11.3.0
Blosc 1.21.3-GCCcore-11.3.0
Blosc2 2.6.1-GCCcore-11.3.0
bokeh 2.4.3-foss-2022a
Boost 1.79.0-GCC-11.3.0
Brotli 1.0.9-GCCcore-11.3.0
bzip2 1.0.8-GCCcore-11.3.0
cairo 1.17.4-GCCcore-11.3.0
Cantera 2.6.0-foss-2022a
cddlib 0.94m-GCCcore-11.3.0
cell2location 0.1.3-foss-2022a-CUDA-11.7.0
cell2location 0.1.3-foss-2022a
Cellpose 2.2-foss-2022a-CUDA-11.7.0
Cellpose 2.2-foss-2022a
CellRanger 7.1.0
CGAL 4.14.3-gompi-2022a
Clang 13.0.1-GCCcore-11.3.0
cma 3.3.0-foss-2022a
CMake 3.24.3-GCCcore-11.3.0
CMake 3.23.1-GCCcore-11.3.0
coexist 0.3.1-foss-2022a
cppy 1.2.1-GCCcore-11.3.0
CUDA 11.7.0
cuDNN 8.4.1.50-CUDA-11.7.0
cURL 7.83.0-GCCcore-11.3.0
dask 2022.12.0-foss-2022a
dask 2022.10.0-foss-2022a
DB 18.1.40-GCCcore-11.3.0
DBus 1.14.0-GCCcore-11.3.0
DCMTK 3.6.7-GCCcore-11.3.0
deepdiff 5.8.1-GCCcore-11.3.0
DendroPy 4.5.2-GCCcore-11.3.0
dill 0.3.6-GCCcore-11.3.0
dm-tree 0.1.8-GCCcore-11.3.0
double-conversion 3.2.0-GCCcore-11.3.0
Doxygen 1.9.4-GCCcore-11.3.0
DSSP 4.4.0-gompi-2022a
DualSPHysics 5.0.233-foss-2022a-CUDA-11.7.0
DualSPHysics 5.0.233-foss-2022a
Eigen 3.4.0-GCCcore-11.3.0
elfutils 0.187-GCCcore-11.3.0
expat 2.4.8-GCCcore-11.3.0
expecttest 0.1.3-GCCcore-11.3.0
FDS 6.8.0-foss-2022a
FFmpeg 4.4.2-GCCcore-11.3.0
ffnvcodec 11.1.5.2
FFTW 3.3.10-NVHPC-22.7-CUDA-11.7.0
FFTW 3.3.10-GCC-11.3.0
FFTW.MPI 3.3.10-nvompi-2022.07
FFTW.MPI 3.3.10-gompi-2022a
FLAC 1.3.4-GCCcore-11.3.0
flatbuffers 2.0.7-GCCcore-11.3.0
flatbuffers-python 2.0-GCCcore-11.3.0
flex 2.6.4-GCCcore-11.3.0
flex 2.6.4
FlexiBLAS 3.2.0-NVHPC-22.7-CUDA-11.7.0
FlexiBLAS 3.2.0-GCC-11.3.0
FLINT 2.9.0-gfbf-2022a
fmt 9.1.0-GCCcore-11.3.0
fontconfig 2.14.0-GCCcore-11.3.0
foss 2022a
freetype 2.12.1-GCCcore-11.3.0
FriBidi 1.0.12-GCCcore-11.3.0
fundiversity 1.1.1-foss-2022a-R-4.2.3
gap 4.12.2-foss-2022a
Gaussian 16.C.02-AVX2
GCC 11.3.0
GCCcore 11.3.0
GDAL 3.5.0-foss-2022a
Gdk-Pixbuf 2.42.8-GCCcore-11.3.0
GDRCopy 2.3-GCCcore-11.3.0
GEOS 3.10.3-GCC-11.3.0
gettext 0.21-GCCcore-11.3.0
gettext 0.21
gfbf 2022a
Ghostscript 9.56.1-GCCcore-11.3.0
giflib 5.2.1-GCCcore-11.3.0
git 2.36.0-GCCcore-11.3.0-nodocs
GitPython 3.1.27-GCCcore-11.3.0
GLib 2.72.1-GCCcore-11.3.0
GLPK 5.0-GCCcore-11.3.0
GMP 6.2.1-GCCcore-11.3.0
gmpy2 2.1.2-GCC-11.3.0
gnuplot 5.4.4-GCCcore-11.3.0
Go 1.17.6
GObject-Introspection 1.72.0-GCCcore-11.3.0
gompi 2022a
googletest 1.11.0-GCCcore-11.3.0
gperf 3.1-GCCcore-11.3.0
Graphene 1.10.8-GCCcore-11.3.0
graphite2 1.3.14-GCCcore-11.3.0
Graphviz 5.0.0-GCCcore-11.3.0
groff 1.22.4-GCCcore-11.3.0
GSL 2.7-GCC-11.3.0
GST-plugins-bad 1.20.2-GCC-11.3.0
GST-plugins-base 1.20.2-GCC-11.3.0
GStreamer 1.20.2-GCC-11.3.0
GTK2 2.24.33-GCCcore-11.3.0
GTK4 4.7.0-GCC-11.3.0
GTS 0.7.6-GCCcore-11.3.0
gzip 1.12-GCCcore-11.3.0
h5py 3.7.0-foss-2022a
HarfBuzz 4.2.1-GCCcore-11.3.0
HDF 4.2.15-GCCcore-11.3.0
HDF5 1.13.1-gompi-2022a
HDF5 1.12.2-gompi-2022a
help2man 1.49.2-GCCcore-11.3.0
HH-suite 3.3.0-gompi-2022a
HMMER 3.3.2-gompi-2022a
Horovod 0.28.0-foss-2022a-CUDA-11.7.0-PyTorch-2.0.1
HPL 2.3-intel-2022a
HPL 2.3-foss-2022a
HTSlib 1.16-GCC-11.3.0
hwloc 2.7.1-GCCcore-11.3.0
hypothesis 6.46.7-GCCcore-11.3.0
ICU 71.1-GCCcore-11.3.0
igraph 0.10.3-foss-2022a
IGV 2.16.0-Java-11
iimpi 2022a
ilastik 1.4.0-linux-x64
imageio 2.22.2-foss-2022a
ImageMagick 7.1.0-37-GCCcore-11.3.0
Imath 3.1.5-GCCcore-11.3.0
imkl 2022.1.0
imkl-FFTW 2022.1.0-iimpi-2022a
impi 2021.6.0-intel-compilers-2022.1.0
intel 2022a
intel-compilers 2022.1.0
InterProScan 5.61-93.0-foss-2022a
intltool 0.51.0-GCCcore-11.3.0
IPython 8.5.0-GCCcore-11.3.0
IRkernel 1.3.2-foss-2022a-R-4.2.3
JasPer 2.0.33-GCCcore-11.3.0
Java 11.0.16
Java 11
jax 0.4.4-foss-2022a-CUDA-11.7.0
jax 0.4.4-foss-2022a
jax 0.3.23-foss-2022a
jax 0.3.14-foss-2022a-CUDA-11.7.0
jbigkit 2.1-GCCcore-11.3.0
JsonCpp 1.9.5-GCCcore-11.3.0
JupyterLab 3.5.0-GCCcore-11.3.0
jupyter-server 1.21.0-GCCcore-11.3.0
Kalign 3.3.5-GCCcore-11.3.0
LAME 3.100-GCCcore-11.3.0
leidenalg 0.9.1-foss-2022a
Leptonica 1.83.0-GCCcore-11.3.0
libarchive 3.6.1-GCCcore-11.3.0
libcerf 2.1-GCCcore-11.3.0
libcifpp 5.1.0-gompi-2022a
libdeflate 1.10-GCCcore-11.3.0
libdrm 2.4.110-GCCcore-11.3.0
libepoxy 1.5.10-GCCcore-11.3.0
libevent 2.1.12-GCCcore-11.3.0
libfabric 1.15.1-GCCcore-11.3.0
libffi 3.4.2-GCCcore-11.3.0
libgd 2.3.3-GCCcore-11.3.0
libgeotiff 1.7.1-GCCcore-11.3.0
libgit2 1.4.3-GCCcore-11.3.0
libGLU 9.0.2-GCCcore-11.3.0
libglvnd 1.4.0-GCCcore-11.3.0
libiconv 1.17-GCCcore-11.3.0
LiBiNorm 2.5
libjpeg-turbo 2.1.3-GCCcore-11.3.0
libmcfp 1.2.4-GCCcore-11.3.0
libogg 1.3.5-GCCcore-11.3.0
libopus 1.3.1-GCCcore-11.3.0
libpciaccess 0.16-GCCcore-11.3.0
libpng 1.6.37-GCCcore-11.3.0
libpng 1.5.30
libreadline 8.1.2-GCCcore-11.3.0
librsvg 2.55.1-GCCcore-11.3.0
libsndfile 1.1.0-GCCcore-11.3.0
libsodium 1.0.18-GCCcore-11.3.0
LibTIFF 4.3.0-GCCcore-11.3.0
libtirpc 1.3.2-GCCcore-11.3.0
libtool 2.4.7-GCCcore-11.3.0
libunwind 1.6.2-GCCcore-11.3.0
libvorbis 1.3.7-GCCcore-11.3.0
libwebp 1.2.4-GCCcore-11.3.0
libxml2 2.9.13-GCCcore-11.3.0
libxslt 1.1.34-GCCcore-11.3.0
libyaml 0.2.5-GCCcore-11.3.0
LittleCMS 2.13.1-GCCcore-11.3.0
LLVM 12.0.1-GCCcore-11.3.0
LMDB 0.9.29-GCCcore-11.3.0
lollipops 1.6.0
lrslib 7.2-gompi-2022a
Lua 5.4.4-GCCcore-11.3.0
lxml 4.9.1-GCCcore-11.3.0
lz4 1.9.3-GCCcore-11.3.0
LZO 2.10-GCCcore-11.3.0
M4 1.4.19-GCCcore-11.3.0
M4 1.4.19
magma 2.6.2-foss-2022a-CUDA-11.7.0
make 4.3-GCCcore-11.3.0
Mako 1.2.0-GCCcore-11.3.0
matplotlib 3.5.2-foss-2022a
Mesa 22.0.3-GCCcore-11.3.0
Meson 0.62.1-GCCcore-11.3.0
METIS 5.1.0-GCCcore-11.3.0
MICRESS 7.200
Miniconda3 4.12.0
Miniconda3 22.11.1-1
MiXCR 4.3.2-Java-11
MNE-Python 1.3.1-foss-2022a
mne-rsa 0.8-foss-2022a
modbam2bed 0.7.0-GCC-11.3.0
mozbc 20230507-foss-2022a
MPC 1.2.1-GCCcore-11.3.0
MPFR 4.1.0-GCCcore-11.3.0
mrc 1.3.9-GCCcore-11.3.0
napari 0.4.17-foss-2022a
NASM 2.15.05-GCCcore-11.3.0
natsort 8.2.0-foss-2022a
NCCL 2.12.12-GCCcore-11.3.0-CUDA-11.7.0
ncurses 6.3-GCCcore-11.3.0
ncurses 6.2
ncurses 5.9
ncview 2.1.8-gompi-2022a
netCDF 4.9.0-gompi-2022a
netCDF-Fortran 4.6.0-gompi-2022a
nettle 3.8-GCCcore-11.3.0
networkx 2.8.4-foss-2022a
NiBabel 4.0.2-foss-2022a
Ninja 1.10.2-GCCcore-11.3.0
nlohmann_json 3.10.5-GCCcore-11.3.0
NLopt 2.7.1-GCCcore-11.3.0
NLTK 3.8-foss-2022a
nodejs 16.15.1-GCCcore-11.3.0
NSPR 4.34-GCCcore-11.3.0
NSS 3.79-GCCcore-11.3.0
nsync 1.25.0-GCCcore-11.3.0
NTL 11.5.1-GCC-11.3.0
numactl 2.0.14-GCCcore-11.3.0
numba 0.56.4-foss-2022a
NVHPC 22.7-CUDA-11.7.0
nvofbf 2022.07
nvompi 2022.07
ont-remora 2.0.0-foss-2022a-CUDA-11.7.0
ont-remora 2.0.0-foss-2022a
OpenBLAS 0.3.20-NVHPC-22.7-CUDA-11.7.0
OpenBLAS 0.3.20-GCC-11.3.0
OpenCV 4.6.0-foss-2022a-CUDA-11.7.0-contrib
OpenCV 4.6.0-foss-2022a-contrib
OpenEXR 3.1.5-GCCcore-11.3.0
OpenFOAM (The OpenFOAM Foundation) 11-foss-2022a
OpenJPEG 2.5.0-GCCcore-11.3.0
OpenMM 7.7.0-foss-2022a
OpenMPI 4.1.4-NVHPC-22.7-CUDA-11.7.0
OpenMPI 4.1.4-GCC-11.3.0
OpenMPI-container 4.1.4
OpenPGM 5.2.122-GCCcore-11.3.0
openpyxl 3.0.10-GCCcore-11.3.0
OpenSceneGraph 3.6.5-foss-2022a
OpenSSL 1.1
OSU-Micro-Benchmarks 5.9-iimpi-2022a
OSU-Micro-Benchmarks 5.9-gompi-2022a
Pango 1.50.7-GCCcore-11.3.0
parasail 2.6-GCC-11.3.0
ParaView 5.10.1-foss-2022a-mpi
pcgr 1.2.0
pcgrr 1.2.0
PCRE 8.45-GCCcore-11.3.0
PCRE2 10.40-GCCcore-11.3.0
PDAL 2.5.5-foss-2022a
pdal-python 3.2.3-foss-2022a
Perl 5.34.1-GCCcore-11.3.0-minimal
Perl 5.34.1-GCCcore-11.3.0
pharokka 1.2.0
PICI-LIGGGHTS 3.8.1-foss-2022a-VTK-9.2.2
Pillow 9.1.1-GCCcore-11.3.0
Pillow-SIMD 9.2.0-GCCcore-11.3.0
pixman 0.40.0-GCCcore-11.3.0
pkgconf 1.8.0-GCCcore-11.3.0
pkgconf 1.8.0
pkg-config 0.29.2-GCCcore-11.3.0
pkgconfig 1.5.5-GCCcore-11.3.0-python
plotly.py 5.12.0-GCCcore-11.3.0
PMIx 4.1.2-GCCcore-11.3.0
poetry 1.2.2-GCCcore-11.3.0
polars 0.17.12-foss-2022a
polymake 4.8-gfbf-2022a
poppler 22.12.0-GCC-11.3.0
PostgreSQL 14.4-GCCcore-11.3.0
PROJ 9.0.0-GCCcore-11.3.0
protobuf 3.19.4-GCCcore-11.3.0
protobuf-python 3.19.4-GCCcore-11.3.0
ptwt 0.1.4.post2-foss-2022a-CUDA-11.7.0
ptwt 0.1.4.post2-foss-2022a
pybedtools 0.9.0-GCC-11.3.0
pybind11 2.9.2-GCCcore-11.3.0
PyCairo 1.21.0-GCCcore-11.3.0
py-cpuinfo 9.0.0-GCCcore-11.3.0
pydicom 2.3.0-GCCcore-11.3.0
PyGObject 3.42.1-GCCcore-11.3.0
pygraphviz 1.10-GCCcore-11.3.0
PyOpenGL 3.1.6-GCCcore-11.3.0
PyQt5 5.15.5-GCCcore-11.3.0
Pysam 0.20.0-GCC-11.3.0
Pysam 0.19.1-GCC-11.3.0
pyseer 1.3.11-foss-2022a
PyTables 3.8.0-foss-2022a
pytesseract 0.3.10-foss-2022a
pytest-xdist 2.5.0-GCCcore-11.3.0
Python 3.10.4-GCCcore-11.3.0-bare
Python 3.10.4-GCCcore-11.3.0
Python 2.7.18-GCCcore-11.3.0-bare
python-igraph 0.10.3-foss-2022a
python-parasail 1.3.3-foss-2022a
PyTorch 2.0.1-foss-2022a-CUDA-11.7.0
PyTorch 1.12.1-foss-2022a-CUDA-11.7.0
PyTorch 1.12.1-foss-2022a
PyTorch-Lightning 2.0.2-foss-2022a-CUDA-11.7.0
PyTorch-Lightning 1.9.3-foss-2022a-CUDA-11.7.0
PyTorch-Lightning 1.9.3-foss-2022a
pyvista 0.36.1-foss-2022a
PyYAML 6.0-GCCcore-11.3.0
Qhull 2020.2-GCCcore-11.3.0
Qt5 5.15.5-GCCcore-11.3.0
Qtconsole 5.4.0-GCCcore-11.3.0
QtPy 2.3.0-GCCcore-11.3.0
R 4.2.3-foss-2022a
RapidJSON 1.1.0-GCCcore-11.3.0
R-bundle-Bioconductor 3.16-foss-2022a-R-4.2.3
RE2 2022-06-01-GCCcore-11.3.0
re2c 2.2-GCCcore-11.3.0
RootPainter 0.2.27.0-foss-2022a-CUDA-11.7.0
Rosetta 3.13-foss-2022a
ruamel.yaml 0.17.21-GCCcore-11.3.0
Rust 1.65.0-GCCcore-11.3.0
Rust 1.60.0-GCCcore-11.3.0
ScaLAPACK 2.2.0-nvompi-2022.07-fb
ScaLAPACK 2.2.0-gompi-2022a-fb
scanpy 1.9.1-foss-2022a
scikit-build 0.15.0-GCCcore-11.3.0
scikit-image 0.19.3-foss-2022a
scikit-learn 1.1.2-foss-2022a
scikit-misc 0.1.4-foss-2022a
SciPy-bundle 2022.05-foss-2022a
SCons 4.4.0-GCCcore-11.3.0
SCons 4.4.0
SCOTCH 7.0.1-gompi-2022a
scvi-tools 0.20.1-foss-2022a-CUDA-11.7.0
scvi-tools 0.20.1-foss-2022a
SDL2 2.0.22-GCCcore-11.3.0
Seaborn 0.12.1-foss-2022a
SHAP 0.41.0-foss-2022a
Simpack 2023.3-foss-2022a
Singular 4.3.2-gfbf-2022a
sklearn-pandas 2.2.0-foss-2022a
snappy 1.1.9-GCCcore-11.3.0
SpaceRanger 2.0.1-GCC-11.3.0
SQLite 3.38.3-GCCcore-11.3.0
STAR-CCM+ 18.02.008
Stata 17.rev2023-01-10
statsmodels 0.13.1-foss-2022a
SUNDIALS 6.5.1-foss-2022a
SVG 2.87-GCC-11.3.0
SWIG 4.0.2-GCCcore-11.3.0
sympy 1.11.1-foss-2022a
Szip 2.1.1-GCCcore-11.3.0
Tcl 8.6.12-GCCcore-11.3.0
tcsh 6.24.01-GCCcore-11.3.0
tensorboardX 2.5.1-foss-2022a
TensorFlow 2.11.0-foss-2022a-CUDA-11.7.0
TensorFlow 2.11.0-foss-2022a
tesseract 5.3.0-GCCcore-11.3.0
time 1.9-GCCcore-11.3.0
Tk 8.6.12-GCCcore-11.3.0
Tkinter 3.10.4-GCCcore-11.3.0
torchvision 0.15.2-foss-2022a-CUDA-11.7.0
tqdm 4.64.0-GCCcore-11.3.0
Transformers 4.24.0-foss-2022a-CUDA-11.7.0
Transformers 4.24.0-foss-2022a
UCC 1.0.0-GCCcore-11.3.0
UCC-CUDA 1.0.0-GCCcore-11.3.0-CUDA-11.7.0
UCX 1.12.1-GCCcore-11.3.0
UCX-CUDA 1.12.1-GCCcore-11.3.0-CUDA-11.7.0
UDUNITS 2.2.28-GCCcore-11.3.0
umap-learn 0.5.3-foss-2022a
UnZip 6.0-GCCcore-11.3.0
utf8proc 2.7.0-GCCcore-11.3.0
util-linux 2.38-GCCcore-11.3.0
VASP 6.3.2-nvofbf-2022.07
VASP 6.3.2-intel-2022a
VASP 6.3.2-foss-2022a-Wannier90
VASP 6.3.2-foss-2022a
VTK 9.2.2-foss-2022a
Wand 0.6.11-foss-2022a
wandb 0.13.6-GCC-11.3.0
Wannier90 3.1.0-foss-2022a-serial
Wayland 1.20.0-GCCcore-11.3.0
windspharm 1.7.0-foss-2022a
WPS 4.4-foss-2022a-dmpar
WRF 4.4-foss-2022a-dmpar-chem
WRF 4.4-foss-2022a-dmpar
X11 20220504-GCCcore-11.3.0
x264 20220620-GCCcore-11.3.0
x265 3.5-GCCcore-11.3.0
xarray 2022.9.0-foss-2022a
Xerces-C++ 3.2.3-GCCcore-11.3.0
xorg-macros 1.19.3-GCCcore-11.3.0
Xvfb 21.1.3-GCCcore-11.3.0
XZ 5.2.5-GCCcore-11.3.0
yaml-cpp 0.7.0-GCCcore-11.3.0
Yasm 1.3.0-GCCcore-11.3.0
Z3 4.10.2-GCCcore-11.3.0
ZeroMQ 4.3.4-GCCcore-11.3.0
Zip 3.0-GCCcore-11.3.0
zlib 1.2.12-GCCcore-11.3.0
zlib 1.2.12
zlib 1.2.11
zstd 1.5.2-GCCcore-11.3.0