SKA2 0.3.4-GCCcore-11.3.0

Split k-mer analysis (version 2) uses exact matching of split k-mer sequences to align closely related sequences, typically small haploid genomes such as bacteria and viruses.

Accessing SKA2 0.3.4-GCCcore-11.3.0

To load the module for SKA2 0.3.4-GCCcore-11.3.0 please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2022a
module load SKA2/0.3.4-GCCcore-11.3.0

BEAR Apps Version

2022a

Architectures

EL8-cascadelake — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the SKA2 website.

Dependencies

This version of SKA2 has a direct dependency on: GCCcore/11.3.0

Required By

This version of SKA2 is a direct dependent of: Gubbins/3.3.1-foss-2022a

Last modified on 6th November 2023