Installed Applications: 2022a and EL8-cascadelake

Applications available on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs). All 2022a or EL8-cascadelake applications. In any one job, or session, you should use applications from only one BEAR Apps Version.

Application Version
4ti2 1.6.10-GCC-11.3.0
adjustText 0.7.3-foss-2022a
aiohttp 3.8.3-GCCcore-11.3.0
AlphaFold 2.3.1-foss-2022a
AMBiT 3.1.1-foss-2022a
AMS 2023.104-gompi-2022a-openmpi
ANSYS 2023R1
ant 1.10.12-Java-11
ANTHRO 20230507-foss-2022a
Archive-Zip 1.68-GCCcore-11.3.0
arpack-ng 3.8.0-foss-2022a
Arrow 8.0.0-foss-2022a
arrow-R 8.0.0-foss-2022a-R-4.2.3
ATK 2.38.0-GCCcore-11.3.0
at-spi2-atk 2.38.0-GCCcore-11.3.0
at-spi2-core 2.44.1-GCCcore-11.3.0
Autoconf 2.71-GCCcore-11.3.0
Autoconf-archive 2023.02.20-GCCcore-11.3.0
Automake 1.16.5-GCCcore-11.3.0
Autotools 20220317-GCCcore-11.3.0
BamTools 2.5.2-GCC-11.3.0
Barracuda_Virtual_Reactor 22.1.1-GCCcore-11.3.0
Bazel 5.1.1-GCCcore-11.3.0
BCFtools 1.15.1-GCC-11.3.0
bcl2fastq2 2.20.0-GCC-11.3.0
bcl-convert 4.0.3-2el7.x86_64
BEAR-R-bio 2022a-foss-2022a-R-4.2.3
BeautifulSoup 4.10.0-GCCcore-11.3.0
BEDTools 2.30.0-GCC-11.3.0
binutils 2.38-GCCcore-11.3.0
binutils 2.38
BiobankRead-Bash 3.1.1-20190507-foss-2022a
Bio-DB-HTS 3.01-GCC-11.3.0
BioPerl 1.7.8-GCCcore-11.3.0
Biopython 1.79-foss-2022a
BioServices 1.11.2-foss-2022a
Bison 3.8.2-GCCcore-11.3.0
Bison 3.8.2
BLIS 0.9.0-GCC-11.3.0
Blosc 1.21.3-GCCcore-11.3.0
Blosc2 2.6.1-GCCcore-11.3.0
bokeh 2.4.3-foss-2022a
Boost 1.79.0-intel-compilers-2022.1.0
Boost 1.79.0-GCC-11.3.0
Boost.Python 1.79.0-GCC-11.3.0
Brotli 1.0.9-GCCcore-11.3.0
BWA 0.7.17-GCCcore-11.3.0
bzip2 1.0.8-GCCcore-11.3.0
cairo 1.17.4-GCCcore-11.3.0
cairomm 1.16.2-GCC-11.3.0
Cantera 2.6.0-foss-2022a
canu 2.2-GCCcore-11.3.0
cddlib 0.94m-GCCcore-11.3.0
cell2location 0.1.3-foss-2022a
Cellpose 2.2-foss-2022a
CellRanger 7.1.0
cffi 1.15.1-GCCcore-11.3.0
CGAL 4.14.3-gompi-2022a
Check 0.15.2-GCCcore-11.3.0
Clair3 1.0.4-foss-2022a
Clang 13.0.1-GCCcore-11.3.0
cma 3.3.0-foss-2022a
CMake 3.24.3-GCCcore-11.3.0
CMake 3.23.1-GCCcore-11.3.0
coexist 0.3.1-foss-2022a
Compress-Raw-Zlib 2.202-GCCcore-11.3.0
CP2K 2023.2-foss-2022a
CppUnit 1.15.1-GCCcore-11.3.0
cppy 1.2.1-GCCcore-11.3.0
cURL 7.83.0-GCCcore-11.3.0
dask 2022.12.0-foss-2022a
dask 2022.10.0-foss-2022a
DB 18.1.40-GCCcore-11.3.0
DBD-mysql 4.050-GCC-11.3.0
DB_File 1.858-GCCcore-11.3.0
DBus 1.14.0-GCCcore-11.3.0
DCMTK 3.6.7-GCCcore-11.3.0
deepdiff 5.8.1-GCCcore-11.3.0
delft3dfm 2023.02-intel-2022a
DendroPy 4.5.2-GCCcore-11.3.0
dill 0.3.6-GCCcore-11.3.0
dm-tree 0.1.8-GCCcore-11.3.0
double-conversion 3.2.0-GCCcore-11.3.0
Doxygen 1.9.4-GCCcore-11.3.0
DSSP 4.4.0-gompi-2022a
DualSPHysics 5.0.233-foss-2022a
edlib 1.3.9-GCC-11.3.0
Eigen 3.4.0-GCCcore-11.3.0
elfutils 0.187-GCCcore-11.3.0
ESMF 8.3.0-foss-2022a
expat 2.4.8-GCCcore-11.3.0
expecttest 0.1.3-GCCcore-11.3.0
fastahack 1.0.0-GCCcore-11.3.0
FastTree 2.1.11-GCCcore-11.3.0
FDS 6.8.0-foss-2022a
fermi-lite 20190320-GCCcore-11.3.0
FFmpeg 4.4.2-GCCcore-11.3.0
FFTW 3.3.10-GCC-11.3.0
FFTW.MPI 3.3.10-gompi-2022a
filevercmp 20191210-GCCcore-11.3.0
FLAC 1.3.4-GCCcore-11.3.0
flatbuffers 2.0.7-GCCcore-11.3.0
flatbuffers-python 2.0-GCCcore-11.3.0
flex 2.6.4-GCCcore-11.3.0
flex 2.6.4
FlexiBLAS 3.2.0-GCC-11.3.0
FLINT 2.9.0-gfbf-2022a
fmt 9.1.0-GCCcore-11.3.0
fontconfig 2.14.0-GCCcore-11.3.0
foss 2022a
freebayes 1.3.7-foss-2022a-R-4.2.3
FreeSurfer 7.4.1-centos8_x86_64
freetype 2.12.1-GCCcore-11.3.0
FriBidi 1.0.12-GCCcore-11.3.0
fsom 20151117-GCCcore-11.3.0
fundiversity 1.1.1-foss-2022a-R-4.2.3
gap 4.12.2-foss-2022a
Gaussian 16.C.02-AVX2
gawk 5.1.1-GCC-11.3.0
GCC 11.3.0
GCCcore 11.3.0
GDAL 3.5.0-intel-2022a-PROJ-6.3.1
GDAL 3.5.0-foss-2022a
Gdk-Pixbuf 2.42.8-GCCcore-11.3.0
gensim 4.3.2-foss-2022a
GEOS 3.10.3-intel-compilers-2022.1.0
GEOS 3.10.3-GCC-11.3.0
gettext 0.21-GCCcore-11.3.0
gettext 0.21
gfastats 1.3.6-GCCcore-11.3.0
gfbf 2022a
Ghostscript 9.56.1-GCCcore-11.3.0
giflib 5.2.1-GCCcore-11.3.0
git 2.36.0-GCCcore-11.3.0-nodocs
GitPython 3.1.27-GCCcore-11.3.0
GLib 2.72.1-GCCcore-11.3.0
GLPK 5.0-GCCcore-11.3.0
GMP 6.2.1-GCCcore-11.3.0
gnuplot 5.4.4-GCCcore-11.3.0
Go 1.17.6
GObject-Introspection 1.72.0-GCCcore-11.3.0
gompi 2022a
googletest 1.11.0-GCCcore-11.3.0
gperf 3.1-GCCcore-11.3.0
Graphene 1.10.8-GCCcore-11.3.0
graphite2 1.3.14-GCCcore-11.3.0
graph-tool 2.55-foss-2022a
Graphviz 5.0.0-GCCcore-11.3.0
groff 1.22.4-GCCcore-11.3.0
GROMACS 2023.3-foss-2022a
GSL 2.7-GCC-11.3.0
GST-plugins-bad 1.20.2-GCC-11.3.0
GST-plugins-base 1.20.2-GCC-11.3.0
GStreamer 1.20.2-GCC-11.3.0
GTK2 2.24.33-GCCcore-11.3.0
GTK3 3.24.33-GCCcore-11.3.0
GTK4 4.7.0-GCC-11.3.0
GTS 0.7.6-GCCcore-11.3.0
Gubbins 3.3.1-foss-2022a
gzip 1.12-GCCcore-11.3.0
h5py 3.7.0-foss-2022a
HarfBuzz 4.2.1-GCCcore-11.3.0
HDBSCAN 0.8.29-foss-2022a
HDF 4.2.15-GCCcore-11.3.0
HDF5 1.13.1-gompi-2022a
HDF5 1.12.2-iimpi-2022a
HDF5 1.12.2-gompi-2022a
help2man 1.49.2-GCCcore-11.3.0
HH-suite 3.3.0-gompi-2022a
HighFive 2.6.2-gompi-2022a
HMMER 3.3.2-gompi-2022a
HPL 2.3-intel-2022a
HPL 2.3-foss-2022a
HTSlib 1.16-GCC-11.3.0
HTSlib 1.15.1-GCC-11.3.0
hwloc 2.7.1-GCCcore-11.3.0
Hydra 1.3.2-GCCcore-11.3.0
hypothesis 6.46.7-GCCcore-11.3.0
Hypre 2.25.0-intel-2022a
ICU 71.1-GCCcore-11.3.0
igraph 0.10.3-foss-2022a
IGV 2.16.0-Java-11
iimpi 2022a
ilastik 1.4.0-linux-x64
imageio 2.22.2-foss-2022a
ImageMagick 7.1.0-37-GCCcore-11.3.0
Imath 3.1.5-GCCcore-11.3.0
imkl 2022.1.0
imkl-FFTW 2022.1.0-iimpi-2022a
impi 2021.6.0-intel-compilers-2022.1.0
intel 2022a
intel-compilers 2022.1.0
InterProScan 5.61-93.0-foss-2022a
intervaltree 0.1-GCCcore-11.3.0
intervaltree-python 3.1.0-GCCcore-11.3.0
intltool 0.51.0-GCCcore-11.3.0
IPython 8.5.0-GCCcore-11.3.0
IQ-TREE 2.2.2.6-gompi-2022a
IRkernel 1.3.2-foss-2022a-R-4.2.3
ISA-L 2.30.0-GCCcore-11.3.0
JasPer 2.0.33-GCCcore-11.3.0
Java 17.0.6
Java 11.0.16
Java 11
jax 0.4.4-foss-2022a
jax 0.3.23-foss-2022a
jbigkit 2.1-GCCcore-11.3.0
jemalloc 5.3.0-GCCcore-11.3.0
JsonCpp 1.9.5-GCCcore-11.3.0
Judy 1.0.5-GCCcore-11.3.0
JupyterLab 3.5.0-GCCcore-11.3.0
jupyter-server 1.21.0-GCCcore-11.3.0
Kalign 3.3.5-GCCcore-11.3.0
LAME 3.100-GCCcore-11.3.0
leidenalg 0.9.1-foss-2022a
Leptonica 1.83.0-GCCcore-11.3.0
Levenshtein 0.22.0-foss-2022a
libaio 0.3.112-GCCcore-11.3.0
libarchive 3.6.1-GCCcore-11.3.0
libcerf 2.1-GCCcore-11.3.0
libcifpp 5.1.0-gompi-2022a
libdeflate 1.10-GCCcore-11.3.0
libdrm 2.4.110-GCCcore-11.3.0
libepoxy 1.5.10-GCCcore-11.3.0
libevent 2.1.12-GCCcore-11.3.0
libfabric 1.15.1-GCCcore-11.3.0
libffi 3.4.2-GCCcore-11.3.0
libgd 2.3.3-GCCcore-11.3.0
libgeotiff 1.7.1-GCCcore-11.3.0-PROJ-6.3.1
libgeotiff 1.7.1-GCCcore-11.3.0
libgit2 1.4.3-GCCcore-11.3.0
libGLU 9.0.2-GCCcore-11.3.0
libglvnd 1.4.0-GCCcore-11.3.0
libiconv 1.17-GCCcore-11.3.0
LiBiNorm 2.5
Libint 2.7.2-GCC-11.3.0-lmax-6-cp2k
libjpeg-turbo 2.1.3-GCCcore-11.3.0
libleidenalg 0.11.1-foss-2022a
libmcfp 1.2.4-GCCcore-11.3.0
libogg 1.3.5-GCCcore-11.3.0
libopus 1.3.1-GCCcore-11.3.0
libpciaccess 0.16-GCCcore-11.3.0
libpng 1.6.37-GCCcore-11.3.0
libpng 1.5.30
libreadline 8.1.2-GCCcore-11.3.0
librsvg 2.55.1-GCCcore-11.3.0
libsigc++ 3.4.0-GCCcore-11.3.0
libsndfile 1.1.0-GCCcore-11.3.0
libsodium 1.0.18-GCCcore-11.3.0
LibTIFF 4.3.0-GCCcore-11.3.0
libtirpc 1.3.2-GCCcore-11.3.0
libtool 2.4.7-GCCcore-11.3.0
libunwind 1.6.2-GCCcore-11.3.0
libvorbis 1.3.7-GCCcore-11.3.0
libwebp 1.2.4-GCCcore-11.3.0
libxc 5.2.3-GCC-11.3.0
libxml2 2.9.13-GCCcore-11.3.0
libxslt 1.1.34-GCCcore-11.3.0
libxsmm 1.17-GCC-11.3.0
libyaml 0.2.5-GCCcore-11.3.0
LittleCMS 2.13.1-GCCcore-11.3.0
LLVM 12.0.1-GCCcore-11.3.0
LMDB 0.9.29-GCCcore-11.3.0
LOBSTER 5.0.0
LOBSTER 4.1.0
lollipops 1.6.0
lrslib 7.2-gompi-2022a
LSD2 2.3-GCCcore-11.3.0
Lua 5.4.4-GCCcore-11.3.0
lxml 4.9.1-GCCcore-11.3.0
lz4 1.9.3-GCCcore-11.3.0
LZO 2.10-GCCcore-11.3.0
M4 1.4.19-GCCcore-11.3.0
M4 1.4.19
MACS2 2.2.9.1-foss-2022a
makeinfo 6.8-GCCcore-11.3.0
Mako 1.2.0-GCCcore-11.3.0
mandrake 1.2.2-foss-2022a
MariaDB 10.9.3-GCC-11.3.0
matplotlib 3.5.2-foss-2022a
MCR R2019b.8
medaka 1.11.1-foss-2022a
Mesa 22.0.3-GCCcore-11.3.0
MESMER 7.0-foss-2022a
Meson 0.62.1-GCCcore-11.3.0
Mesquite 2.3.0-GCCcore-11.3.0
METIS 5.1.0-GCCcore-11.3.0
MICRESS 7.200
Miniconda3 4.12.0
Miniconda3 22.11.1-1
minimap2 2.24-GCCcore-11.3.0
MiXCR 4.3.2-Java-11
mm-common 1.0.5-GCCcore-11.3.0
MNE-Python 1.3.1-foss-2022a
mne-rsa 0.8-foss-2022a
modbam2bed 0.7.0-GCC-11.3.0
mozbc 20230507-foss-2022a
mpath 1.1.3-GCCcore-11.3.0
MPFR 4.1.0-GCCcore-11.3.0
mrc 1.3.9-GCCcore-11.3.0
multichoose 1.0.3-GCCcore-11.3.0
multiprocess 0.70.14-GCCcore-11.3.0
MUMmer 4.0.0rc1-GCCcore-11.3.0
MUMPS 5.5.1-intel-2022a-metis
napari 0.4.17-foss-2022a
NASM 2.15.05-GCCcore-11.3.0
natsort 8.2.0-foss-2022a
ncurses 6.3-GCCcore-11.3.0
ncurses 6.2
ncurses 5.9
ncview 2.1.8-gompi-2022a
netCDF 4.9.0-iimpi-2022a
netCDF 4.9.0-gompi-2022a
netCDF-C++4 4.3.1-gompi-2022a
netCDF-Fortran 4.6.0-iimpi-2022a
netCDF-Fortran 4.6.0-gompi-2022a
nettle 3.8-GCCcore-11.3.0
networkx 2.8.4-foss-2022a
NiBabel 4.0.2-foss-2022a
Ninja 1.10.2-GCCcore-11.3.0
nlohmann_json 3.10.5-GCCcore-11.3.0
NLopt 2.7.1-GCCcore-11.3.0
NLTK 3.8-foss-2022a
nodejs 16.15.1-GCCcore-11.3.0
NSPR 4.34-GCCcore-11.3.0
NSS 3.79-GCCcore-11.3.0
nsync 1.25.0-GCCcore-11.3.0
NTL 11.5.1-GCC-11.3.0
numactl 2.0.14-GCCcore-11.3.0
numba 0.56.4-foss-2022a
numbakit-ode 0.5-foss-2022a
ont-fast5-api 4.1.1-foss-2022a
ont-remora 2.0.0-foss-2022a
OpenBLAS 0.3.20-GCC-11.3.0
OpenCV 4.6.0-foss-2022a-contrib
OpenEXR 3.1.5-GCCcore-11.3.0
OpenFOAM-Extend 5.0-20230821-foss-2022a
OpenFOAM (The OpenFOAM Foundation) 11-foss-2022a
OpenJPEG 2.5.0-GCCcore-11.3.0
OpenMM 7.7.0-foss-2022a
OpenMPI 4.1.4-GCC-11.3.0
OpenMPI-container 4.1.4
OpenPGM 5.2.122-GCCcore-11.3.0
openpyxl 3.0.10-GCCcore-11.3.0
OpenSceneGraph 3.6.5-foss-2022a
OpenSSL 1.1
OSU-Micro-Benchmarks 5.9-iimpi-2022a
OSU-Micro-Benchmarks 5.9-gompi-2022a
Pango 1.50.7-GCCcore-11.3.0
parallel 20220722-GCCcore-11.3.0
parasail 2.6-GCC-11.3.0
ParaView 5.10.1-foss-2022a-mpi
ParMETIS 4.0.3-gompi-2022a
ParMGridGen 1.0-gompi-2022a
patchelf 0.15.0-GCCcore-11.3.0
pcgr 1.2.0
pcgrr 1.2.0
PCRE 8.45-GCCcore-11.3.0
PCRE2 10.40-GCCcore-11.3.0
PDAL 2.5.5-foss-2022a
pdal-python 3.2.3-foss-2022a
Perl 5.34.1-GCCcore-11.3.0-minimal
Perl 5.34.1-GCCcore-11.3.0
PETSc 3.17.4-intel-2022a
pharokka 1.2.0
PICI-LIGGGHTS 3.8.1-foss-2022a-VTK-9.2.2
pigz 2.7-GCCcore-11.3.0
Pillow 9.1.1-GCCcore-11.3.0
pixman 0.40.0-GCCcore-11.3.0
pkgconf 1.8.0-GCCcore-11.3.0
pkgconf 1.8.0
pkg-config 0.29.2-GCCcore-11.3.0
pkgconfig 1.5.5-GCCcore-11.3.0-python
plotly.py 5.12.0-GCCcore-11.3.0
PLUMED 2.8.1-foss-2022a
PMIx 4.1.2-GCCcore-11.3.0
poetry 1.2.2-GCCcore-11.3.0
polars 0.17.12-foss-2022a
polymake 4.8-gfbf-2022a
poppler 22.12.0-GCC-11.3.0
poppunk 2.6.1-foss-2022a
PostgreSQL 14.4-GCCcore-11.3.0
pp-sketchlib 2.1.1-foss-2022a
PROJ 9.0.0-GCCcore-11.3.0
PROJ 6.3.1-GCCcore-11.3.0
protobuf 3.19.4-GCCcore-11.3.0
protobuf-python 3.19.4-GCCcore-11.3.0
ptwt 0.1.4.post2-foss-2022a
pybedtools 0.9.0-GCC-11.3.0
pybind11 2.9.2-GCCcore-11.3.0
PyCairo 1.21.0-GCCcore-11.3.0
py-cpuinfo 9.0.0-GCCcore-11.3.0
pydicom 2.3.0-GCCcore-11.3.0
pyfaidx 0.7.1-GCCcore-11.3.0
pyfasta 0.5.2-foss-2022a
PyGObject 3.42.1-GCCcore-11.3.0
pygraphviz 1.10-GCCcore-11.3.0
PyOpenGL 3.1.6-GCCcore-11.3.0
PyPy 7.3.12-3.10
PyQt5 5.15.5-GCCcore-11.3.0
Pysam 0.20.0-GCC-11.3.0
Pysam 0.19.1-GCC-11.3.0
pyseer 1.3.11-foss-2022a
PyTables 3.8.0-foss-2022a
pytesseract 0.3.10-foss-2022a
pytest-xdist 2.5.0-GCCcore-11.3.0
Python 3.10.4-GCCcore-11.3.0-bare
Python 3.10.4-GCCcore-11.3.0
Python 2.7.18-GCCcore-11.3.0-bare
python-igraph 0.10.3-foss-2022a
python-isal 1.1.0-GCCcore-11.3.0
python-parasail 1.3.3-foss-2022a
PyTorch 1.12.1-foss-2022a
PyTorch-Lightning 1.9.3-foss-2022a
pyvista 0.36.1-foss-2022a
PyYAML 6.0-GCCcore-11.3.0
QD 2.3.23-foss-2022a
Qhull 2020.2-GCCcore-11.3.0
Qt5 5.15.5-GCCcore-11.3.0
Qtconsole 5.4.0-GCCcore-11.3.0
QtPy 2.3.0-GCCcore-11.3.0
QUAST 5.2.0-foss-2022a
R 4.2.3-foss-2022a
Racon 1.5.0-GCCcore-11.3.0
RagTag 2.1.0-foss-2022a
rapidfuzz 2.13.7-foss-2022a
RapidJSON 1.1.0-GCCcore-11.3.0
rapidNJ 2.3.3-GCCcore-11.3.0
RAxML 8.2.12-gompi-2022a-avx2
RAxML-NG 1.1.0-GCC-11.3.0
R-bundle-Bioconductor 3.16-foss-2022a-R-4.2.3
RE2 2022-06-01-GCCcore-11.3.0
re2c 2.2-GCCcore-11.3.0
Rosetta 3.13-foss-2022a
ruamel.yaml 0.17.21-GCCcore-11.3.0
Rust 1.73.0-GCCcore-11.3.0
Rust 1.65.0-GCCcore-11.3.0
Rust 1.60.0-GCCcore-11.3.0
SAMtools 1.16.1-GCC-11.3.0
ScaLAPACK 2.2.0-gompi-2022a-fb
scanpy 1.9.1-foss-2022a
scikit-build 0.15.0-GCCcore-11.3.0
scikit-image 0.19.3-foss-2022a
scikit-learn 1.1.2-foss-2022a
scikit-misc 0.1.4-foss-2022a
SciPy-bundle 2022.05-intel-2022a
SciPy-bundle 2022.05-foss-2022a
SCons 4.4.0-GCCcore-11.3.0
SCons 4.4.0
SCOTCH 7.0.1-iimpi-2022a
SCOTCH 7.0.1-gompi-2022a
scvi-tools 0.20.1-foss-2022a
SDL2 2.0.22-GCCcore-11.3.0
Seaborn 0.12.1-foss-2022a
SeqLib 1.2.0-GCC-11.3.0
SHAP 0.41.0-foss-2022a
Simpack 2023.3-foss-2022a
Singular 4.3.2-gfbf-2022a
SKA2 0.3.4-GCCcore-11.3.0
sklearn-pandas 2.2.0-foss-2022a
smithwaterman 20160702-GCCcore-11.3.0
snappy 1.1.9-GCCcore-11.3.0
SpaceRanger 2.0.1-GCC-11.3.0
sparsehash 2.0.4-GCCcore-11.3.0
Sphinx-RTD-Theme 1.3.0-GCCcore-11.3.0
SQLite 3.38.3-GCCcore-11.3.0
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STAR-CCM+ 18.02.008
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