Installed Applications: 2022a and EL8-cascadelake

Applications available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). All 2022a or EL8-cascadelake applications. In any one job, or session, you should use applications from only one BEAR Apps Version.

Application Version
aiohttp 3.8.3-GCCcore-11.3.0
AlphaFold 2.3.1-foss-2022a
ANSYS 2023R1
ant 1.10.12-Java-11
arpack-ng 3.8.0-foss-2022a
Arrow 8.0.0-foss-2022a
ATK 2.38.0-GCCcore-11.3.0
at-spi2-atk 2.38.0-GCCcore-11.3.0
at-spi2-core 2.44.1-GCCcore-11.3.0
Autoconf 2.71-GCCcore-11.3.0
Automake 1.16.5-GCCcore-11.3.0
Autotools 20220317-GCCcore-11.3.0
Barracuda_Virtual_Reactor 22.1.1-GCCcore-11.3.0
Bazel 5.1.1-GCCcore-11.3.0
bcl2fastq2 2.20.0-GCC-11.3.0
bcl-convert 4.0.3-2el7.x86_64
BeautifulSoup 4.10.0-GCCcore-11.3.0
binutils 2.38-GCCcore-11.3.0
binutils 2.38
Biopython 1.79-foss-2022a
Bison 3.8.2-GCCcore-11.3.0
Bison 3.8.2
BLIS 0.9.0-GCC-11.3.0
Blosc 1.21.3-GCCcore-11.3.0
Blosc2 2.6.1-GCCcore-11.3.0
bokeh 2.4.3-foss-2022a
Boost 1.79.0-GCC-11.3.0
Brotli 1.0.9-GCCcore-11.3.0
bzip2 1.0.8-GCCcore-11.3.0
cairo 1.17.4-GCCcore-11.3.0
cell2location 0.1.3-foss-2022a
Cellpose 2.2-foss-2022a
CellRanger 7.1.0
Clang 13.0.1-GCCcore-11.3.0
cma 3.3.0-foss-2022a
CMake 3.24.3-GCCcore-11.3.0
CMake 3.23.1-GCCcore-11.3.0
coexist 0.3.1-foss-2022a
cppy 1.2.1-GCCcore-11.3.0
cURL 7.83.0-GCCcore-11.3.0
dask 2022.10.0-foss-2022a
DB 18.1.40-GCCcore-11.3.0
DBus 1.14.0-GCCcore-11.3.0
deepdiff 5.8.1-GCCcore-11.3.0
dill 0.3.6-GCCcore-11.3.0
dm-tree 0.1.8-GCCcore-11.3.0
double-conversion 3.2.0-GCCcore-11.3.0
Doxygen 1.9.4-GCCcore-11.3.0
Eigen 3.4.0-GCCcore-11.3.0
elfutils 0.187-GCCcore-11.3.0
expat 2.4.8-GCCcore-11.3.0
expecttest 0.1.3-GCCcore-11.3.0
FFmpeg 4.4.2-GCCcore-11.3.0
FFTW 3.3.10-GCC-11.3.0
FFTW.MPI 3.3.10-gompi-2022a
flatbuffers 2.0.7-GCCcore-11.3.0
flatbuffers-python 2.0-GCCcore-11.3.0
flex 2.6.4-GCCcore-11.3.0
flex 2.6.4
FlexiBLAS 3.2.0-GCC-11.3.0
fontconfig 2.14.0-GCCcore-11.3.0
foss 2022a
freetype 2.12.1-GCCcore-11.3.0
FriBidi 1.0.12-GCCcore-11.3.0
GCC 11.3.0
GCCcore 11.3.0
Gdk-Pixbuf 2.42.8-GCCcore-11.3.0
gettext 0.21-GCCcore-11.3.0
gettext 0.21
Ghostscript 9.56.1-GCCcore-11.3.0
giflib 5.2.1-GCCcore-11.3.0
git 2.36.0-GCCcore-11.3.0-nodocs
GitPython 3.1.27-GCCcore-11.3.0
GLib 2.72.1-GCCcore-11.3.0
GLPK 5.0-GCCcore-11.3.0
GMP 6.2.1-GCCcore-11.3.0
GObject-Introspection 1.72.0-GCCcore-11.3.0
gompi 2022a
gperf 3.1-GCCcore-11.3.0
Graphene 1.10.8-GCCcore-11.3.0
graphite2 1.3.14-GCCcore-11.3.0
groff 1.22.4-GCCcore-11.3.0
GSL 2.7-GCC-11.3.0
GST-plugins-bad 1.20.2-GCC-11.3.0
GST-plugins-base 1.20.2-GCC-11.3.0
GStreamer 1.20.2-GCC-11.3.0
GTK2 2.24.33-GCCcore-11.3.0
GTK4 4.7.0-GCC-11.3.0
gzip 1.12-GCCcore-11.3.0
h5py 3.7.0-foss-2022a
HarfBuzz 4.2.1-GCCcore-11.3.0
HDF5 1.13.1-gompi-2022a
HDF5 1.12.2-gompi-2022a
help2man 1.49.2-GCCcore-11.3.0
HH-suite 3.3.0-gompi-2022a
HMMER 3.3.2-gompi-2022a
HPL 2.3-foss-2022a
HTSlib 1.16-GCC-11.3.0
hwloc 2.7.1-GCCcore-11.3.0
hypothesis 6.46.7-GCCcore-11.3.0
ICU 71.1-GCCcore-11.3.0
igraph 0.10.3-foss-2022a
IGV 2.16.0-Java-11
iimpi 2022a
ilastik 1.4.0-linux-x64
imageio 2.22.2-foss-2022a
ImageMagick 7.1.0-37-GCCcore-11.3.0
Imath 3.1.5-GCCcore-11.3.0
imkl 2022.1.0
imkl-FFTW 2022.1.0-iimpi-2022a
impi 2021.6.0-intel-compilers-2022.1.0
intel 2022a
intel-compilers 2022.1.0
InterProScan 5.61-93.0-foss-2022a
intltool 0.51.0-GCCcore-11.3.0
IPython 8.5.0-GCCcore-11.3.0
JasPer 2.0.33-GCCcore-11.3.0
Java 11.0.16
Java 11
jax 0.4.4-foss-2022a
jax 0.3.23-foss-2022a
jbigkit 2.1-GCCcore-11.3.0
JsonCpp 1.9.5-GCCcore-11.3.0
Kalign 3.3.5-GCCcore-11.3.0
LAME 3.100-GCCcore-11.3.0
leidenalg 0.9.1-foss-2022a
Leptonica 1.83.0-GCCcore-11.3.0
libarchive 3.6.1-GCCcore-11.3.0
libdeflate 1.10-GCCcore-11.3.0
libdrm 2.4.110-GCCcore-11.3.0
libepoxy 1.5.10-GCCcore-11.3.0
libevent 2.1.12-GCCcore-11.3.0
libfabric 1.15.1-GCCcore-11.3.0
libffi 3.4.2-GCCcore-11.3.0
libgd 2.3.3-GCCcore-11.3.0
libGLU 9.0.2-GCCcore-11.3.0
libglvnd 1.4.0-GCCcore-11.3.0
libiconv 1.17-GCCcore-11.3.0
LiBiNorm 2.5
libjpeg-turbo 2.1.3-GCCcore-11.3.0
libpciaccess 0.16-GCCcore-11.3.0
libpng 1.6.37-GCCcore-11.3.0
libpng 1.5.30
libreadline 8.1.2-GCCcore-11.3.0
libsodium 1.0.18-GCCcore-11.3.0
LibTIFF 4.3.0-GCCcore-11.3.0
libtool 2.4.7-GCCcore-11.3.0
libunwind 1.6.2-GCCcore-11.3.0
libwebp 1.2.4-GCCcore-11.3.0
libxml2 2.9.13-GCCcore-11.3.0
libxslt 1.1.34-GCCcore-11.3.0
libyaml 0.2.5-GCCcore-11.3.0
LittleCMS 2.13.1-GCCcore-11.3.0
LLVM 12.0.1-GCCcore-11.3.0
LMDB 0.9.29-GCCcore-11.3.0
lxml 4.9.1-GCCcore-11.3.0
lz4 1.9.3-GCCcore-11.3.0
LZO 2.10-GCCcore-11.3.0
M4 1.4.19-GCCcore-11.3.0
M4 1.4.19
Mako 1.2.0-GCCcore-11.3.0
matplotlib 3.5.2-foss-2022a
Mesa 22.0.3-GCCcore-11.3.0
Meson 0.62.1-GCCcore-11.3.0
Miniconda3 4.12.0
Miniconda3 22.11.1-1
MiXCR 4.3.2-Java-11
MNE-Python 1.3.1-foss-2022a
mne-rsa 0.8-foss-2022a
modbam2bed 0.7.0-GCC-11.3.0
MPFR 4.1.0-GCCcore-11.3.0
NASM 2.15.05-GCCcore-11.3.0
natsort 8.2.0-foss-2022a
ncurses 6.3-GCCcore-11.3.0
ncurses 6.2
ncurses 5.9
networkx 2.8.4-foss-2022a
NiBabel 4.0.2-foss-2022a
Ninja 1.10.2-GCCcore-11.3.0
NLTK 3.8-foss-2022a
nodejs 16.15.1-GCCcore-11.3.0
NSPR 4.34-GCCcore-11.3.0
NSS 3.79-GCCcore-11.3.0
nsync 1.25.0-GCCcore-11.3.0
numactl 2.0.14-GCCcore-11.3.0
numba 0.56.4-foss-2022a
ont-remora 2.0.0-foss-2022a
OpenBLAS 0.3.20-GCC-11.3.0
OpenCV 4.6.0-foss-2022a-contrib
OpenEXR 3.1.5-GCCcore-11.3.0
OpenJPEG 2.5.0-GCCcore-11.3.0
OpenMM 7.7.0-foss-2022a
OpenMPI 4.1.4-GCC-11.3.0
OpenMPI-container 4.1.4
OpenPGM 5.2.122-GCCcore-11.3.0
openpyxl 3.0.10-GCCcore-11.3.0
OpenSSL 1.1
OSU-Micro-Benchmarks 5.9-iimpi-2022a
OSU-Micro-Benchmarks 5.9-gompi-2022a
Pango 1.50.7-GCCcore-11.3.0
parasail 2.6-GCC-11.3.0
pcgr 1.2.0
pcgrr 1.2.0
PCRE 8.45-GCCcore-11.3.0
PCRE2 10.40-GCCcore-11.3.0
Perl 5.34.1-GCCcore-11.3.0
pharokka 1.2.0
PICI-LIGGGHTS 3.8.1-foss-2022a-VTK-9.2.2
Pillow 9.1.1-GCCcore-11.3.0
pixman 0.40.0-GCCcore-11.3.0
pkgconf 1.8.0-GCCcore-11.3.0
pkgconf 1.8.0
pkg-config 0.29.2-GCCcore-11.3.0
pkgconfig 1.5.5-GCCcore-11.3.0-python
plotly.py 5.12.0-GCCcore-11.3.0
PMIx 4.1.2-GCCcore-11.3.0
poetry 1.2.2-GCCcore-11.3.0
polars 0.17.12-foss-2022a
protobuf 3.19.4-GCCcore-11.3.0
protobuf-python 3.19.4-GCCcore-11.3.0
ptwt 0.1.4.post2-foss-2022a
pybind11 2.9.2-GCCcore-11.3.0
PyCairo 1.21.0-GCCcore-11.3.0
py-cpuinfo 9.0.0-GCCcore-11.3.0
pydicom 2.3.0-GCCcore-11.3.0
PyGObject 3.42.1-GCCcore-11.3.0
PyQt5 5.15.5-GCCcore-11.3.0
Pysam 0.20.0-GCC-11.3.0
PyTables 3.8.0-foss-2022a
pytesseract 0.3.10-foss-2022a
pytest-xdist 2.5.0-GCCcore-11.3.0
Python 3.10.4-GCCcore-11.3.0-bare
Python 3.10.4-GCCcore-11.3.0
Python 2.7.18-GCCcore-11.3.0-bare
python-igraph 0.10.3-foss-2022a
python-parasail 1.3.3-foss-2022a
PyTorch 1.12.1-foss-2022a
PyTorch-Lightning 1.9.3-foss-2022a
pyvista 0.36.1-foss-2022a
PyYAML 6.0-GCCcore-11.3.0
Qhull 2020.2-GCCcore-11.3.0
Qt5 5.15.5-GCCcore-11.3.0
QtPy 2.3.0-GCCcore-11.3.0
RapidJSON 1.1.0-GCCcore-11.3.0
RE2 2022-06-01-GCCcore-11.3.0
re2c 2.2-GCCcore-11.3.0
Rust 1.65.0-GCCcore-11.3.0
Rust 1.60.0-GCCcore-11.3.0
ScaLAPACK 2.2.0-gompi-2022a-fb
scanpy 1.9.1-foss-2022a
scikit-build 0.15.0-GCCcore-11.3.0
scikit-image 0.19.3-foss-2022a
scikit-learn 1.1.2-foss-2022a
scikit-misc 0.1.4-foss-2022a
SciPy-bundle 2022.05-foss-2022a
scvi-tools 0.20.1-foss-2022a
Seaborn 0.12.1-foss-2022a
SHAP 0.41.0-foss-2022a
Simpack 2023.3-foss-2022a
sklearn-pandas 2.2.0-foss-2022a
snappy 1.1.9-GCCcore-11.3.0
SpaceRanger 2.0.1-GCC-11.3.0
SQLite 3.38.3-GCCcore-11.3.0
STAR-CCM+ 18.02.008
Stata 17.rev2023-01-10
statsmodels 0.13.1-foss-2022a
SWIG 4.0.2-GCCcore-11.3.0
Szip 2.1.1-GCCcore-11.3.0
Tcl 8.6.12-GCCcore-11.3.0
tensorboardX 2.5.1-foss-2022a
TensorFlow 2.11.0-foss-2022a
tesseract 5.3.0-GCCcore-11.3.0
Tk 8.6.12-GCCcore-11.3.0
Tkinter 3.10.4-GCCcore-11.3.0
tqdm 4.64.0-GCCcore-11.3.0
Transformers 4.24.0-foss-2022a
UCC 1.0.0-GCCcore-11.3.0
UCX 1.12.1-GCCcore-11.3.0
umap-learn 0.5.3-foss-2022a
UnZip 6.0-GCCcore-11.3.0
utf8proc 2.7.0-GCCcore-11.3.0
util-linux 2.38-GCCcore-11.3.0
VASP 6.3.2-intel-2022a
VASP 6.3.2-foss-2022a-Wannier90
VASP 6.3.2-foss-2022a
VTK 9.2.2-foss-2022a
Wand 0.6.11-foss-2022a
wandb 0.13.6-GCC-11.3.0
Wannier90 3.1.0-foss-2022a-serial
Wayland 1.20.0-GCCcore-11.3.0
X11 20220504-GCCcore-11.3.0
x264 20220620-GCCcore-11.3.0
x265 3.5-GCCcore-11.3.0
xorg-macros 1.19.3-GCCcore-11.3.0
XZ 5.2.5-GCCcore-11.3.0
Yasm 1.3.0-GCCcore-11.3.0
Z3 4.10.2-GCCcore-11.3.0
ZeroMQ 4.3.4-GCCcore-11.3.0
Zip 3.0-GCCcore-11.3.0
zlib 1.2.12-GCCcore-11.3.0
zlib 1.2.12
zlib 1.2.11
zstd 1.5.2-GCCcore-11.3.0