CellRanger 7.1.0Cell Ranger is a set of analysis pipelines that process Chromium single-cell RNA-seq output to align reads, generate gene-cell matrices and perform clustering and gene expression analysis.
Accessing CellRanger 7.1.0
To load the module for CellRanger 7.1.0 please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):
module load bear-apps/2022a
module load CellRanger/7.1.0
BEAR Apps Version
The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
CellRanger Reference Data
The Cell Ranger reference data sets and these are available in
CellRanger and bcl2fastq
Please note that some of the CellRanger pipelines (e.g. cellranger mkfastq) require the use of another application: bcl2fastq. If required, please select a version bcl2fastq2 to use.
For more information visit the CellRanger website.
Last modified on 11th May 2023