bcl2fastq Conversion Software both demultiplexes data and converts BCL files generated by Illumina sequencing systems to standard FASTQ file formats for downstream analysis.

More Information

For more information visit the bcl2fastq2 website.

Available Versions

These versions of bcl2fastq2 are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Version BEAR Apps Version
2.20.0-GCC-9.3.0 2020a
2.20.0-GCC-11.3.0 2022a