BEAR Applications

bcl2fastq2 2.20.0-GCC-9.3.0

There is a newer version of bcl2fastq2

bcl2fastq Conversion Software both demultiplexes data and converts BCL files generated by Illumina sequencing systems to standard FASTQ file formats for downstream analysis.

Accessing bcl2fastq2 2.20.0-GCC-9.3.0

To load the module for bcl2fastq2 2.20.0-GCC-9.3.0 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load bcl2fastq2/2.20.0-GCC-9.3.0

BEAR Apps Version

2020a

Architectures

EL8-cascadelake — EL8-haswell — Ubuntu20.04-haswell

The listed architectures consist of two part: OS-CPU.

• BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
• BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

More Information

For more information visit the bcl2fastq2 website.

Dependencies

This version of bcl2fastq2 has a direct dependency on: GCC/9.3.0 zlib/1.2.11-GCCcore-9.3.0

Required By

This version of bcl2fastq2 is a direct dependent of: SpaceRanger/1.2.2-GCC-9.3.0

Other Versions

These versions of bcl2fastq2 are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 9th February 2021